View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0532_low_11 (Length: 483)
Name: NF0532_low_11
Description: NF0532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0532_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 140; Significance: 4e-73; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 322 - 473
Target Start/End: Original strand, 38613476 - 38613627
Alignment:
| Q |
322 |
taattcttactaaatatttcacagagctcctttgctttgccaacaaattcaggaacttcatatctgaaggtgccgttccatctccttctttgttctctac |
421 |
Q |
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| T |
38613476 |
taattcttactaaatattccacagagctcctttgctttgccaacaaattcaggaacttcatatctgaaggtgccgttccatctccttctttgttctctac |
38613575 |
T |
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| Q |
422 |
ttttatttatttttctatctcgtagcaagtttggccatcatcatcatctctg |
473 |
Q |
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| T |
38613576 |
ttttatttatttttctatctcgtaacaagtttggccatcatcatcttctctg |
38613627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 200 - 330
Target Start/End: Original strand, 38612088 - 38612218
Alignment:
| Q |
200 |
acgcccttacatttgcacctcacttttaaattacaatgcccaacaccttcgctcattcttctggtgccgttattattggtgttatctcttgtatttttcc |
299 |
Q |
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| T |
38612088 |
acgcccttacatttgcacctcacttttaaattacaatgcccaacaccttcgctcattcttctggtgccgttattattggtgttatctcttgtattttttc |
38612187 |
T |
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| Q |
300 |
tgtttagaaaatgatctgatgttaattctta |
330 |
Q |
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| T |
38612188 |
tgtttagaaaatgatctgatgttaattctta |
38612218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 30 - 156
Target Start/End: Original strand, 38611918 - 38612044
Alignment:
| Q |
30 |
tataataactatgcaggtcgggaataacatgtatttttgtaatcggaaggagaaggtcaacttttcatttcatgttcccctttcaatttcaaactaatat |
129 |
Q |
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| T |
38611918 |
tataataactatgcaggtggggaataccatgtatttttgtaatcggaaggagaaggtcaacttttcatttcatgctcccctttcaatttcaaactaatat |
38612017 |
T |
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| Q |
130 |
atgtgtttttgcaataccatgtaagtg |
156 |
Q |
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| T |
38612018 |
atgtgtttttgcaataccatgtaagtg |
38612044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 276
Target Start/End: Original strand, 14667244 - 14667294
Alignment:
| Q |
226 |
taaattacaatgcccaacaccttcgctcattcttctggtgccgttattatt |
276 |
Q |
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| T |
14667244 |
taaattacaatgcctaacacctttcctcattcttctggcggcgttattatt |
14667294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 276
Target Start/End: Original strand, 1012494 - 1012544
Alignment:
| Q |
226 |
taaattacaatgcccaacaccttcgctcattcttctggtgccgttattatt |
276 |
Q |
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| T |
1012494 |
taaattacaatgcctaacacctttcctcattcttctggcggcgttattatt |
1012544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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