View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0532_low_12 (Length: 466)

Name: NF0532_low_12
Description: NF0532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0532_low_12
NF0532_low_12
[»] chr1 (18 HSPs)
chr1 (121-390)||(2011757-2012020)
chr1 (129-390)||(2010355-2010610)
chr1 (129-390)||(2019574-2019823)
chr1 (130-390)||(2006258-2006527)
chr1 (131-339)||(6601779-6601981)
chr1 (152-217)||(6592643-6592708)
chr1 (293-330)||(2948497-2948534)
chr1 (293-330)||(3340472-3340509)
chr1 (149-214)||(3372513-3372578)
chr1 (293-334)||(4323139-4323180)
chr1 (267-328)||(9818941-9819002)
chr1 (283-330)||(3349336-3349383)
chr1 (122-217)||(3361514-3361609)
chr1 (262-321)||(3378667-3378726)
chr1 (293-331)||(3361682-3361720)
chr1 (262-340)||(6592526-6592604)
chr1 (125-218)||(3218661-3218754)
chr1 (130-234)||(4323236-4323340)
[»] chr2 (9 HSPs)
chr2 (123-217)||(39273846-39273940)
chr2 (130-226)||(20934264-20934360)
chr2 (130-217)||(20952808-20952895)
chr2 (290-344)||(20923438-20923492)
chr2 (21-70)||(42824078-42824127)
chr2 (132-234)||(20926881-20926984)
chr2 (293-343)||(20952962-20953012)
chr2 (151-234)||(20923302-20923385)
chr2 (293-347)||(20927040-20927094)
[»] chr5 (1 HSPs)
chr5 (293-330)||(17969825-17969862)


Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 121 - 390
Target Start/End: Original strand, 2011757 - 2012020
Alignment:
Q  121 tttgtcatgcttgccaattagggatgttgtgagaacaagtgttttatcaaacaaatggaggtacaaatggatcacaataccaaatcttgtgtttgattca 220  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2011757 tttgtcatgcttgccaattagggatgttgtgagaacaagtattttatcaaacaaatggaggtacaaatggatcacaataccaaatcttgtgtttgattca 2011856  T
Q  221 caatgtgtgtctgcaacatcgatttctgaccaccctgcagctatcaagagaaagcttttggcaattatcgaccatgtacttttactttattctgggccaa 320  Q
    ||||||||||||||||||      ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2011857 caatgtgtgtctgcaaca------tctgaacaccctgcagctatcaagagaaagcttttggcaattatcgaccatgtacttttactttattatgggccaa 2011950  T
Q  321 tcaacaagttcaagctctctgattgtgttgtgatcagtgcgactgctcttgataggtggatttttcatct 390  Q
    ||||||||||||||||||||  || || | | || |||||||||||||||||||||||||||||||||||    
T  2011951 tcaacaagttcaagctctctccttttggtctcattagtgcgactgctcttgataggtggatttttcatct 2012020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 129 - 390
Target Start/End: Original strand, 2010355 - 2010610
Alignment:
Q  129 gcttgccaattagggatgttgtgagaacaagtgttttatcaaacaaatggaggtacaaatggatcacaataccaaatcttgtgtttgattcacaatgtgt 228  Q
    ||||||| |||||||| ||||||||||||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||||||  |||||||||    
T  2010355 gcttgcctattagggacgttgtgagaacaagtgttttatgcaacaaatggaggtacaaatggaccacaataccaaatcttgtgtttgataaacaatgtgt 2010454  T
Q  229 gtctgcaacatcgatttctgaccaccctgcagctatcaagagaaagcttttggcaattatcgaccatgtacttttactttattctgggccaatcaacaag 328  Q
     |||||||||||   |      | ||||  || |||| |||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||    
T  2010455 ctctgcaacatcccat------cgccctttagttatcgagagaaagcttttggcaattattgatcatgtacttttactttattccgggccaatcaacaag 2010548  T
Q  329 ttcaagctctctgattgtgttgtgatcagtgcgactgctcttgataggtggatttttcatct 390  Q
    ||||||||||||||||||| ||||||||||| ||||||| ||||||||| ||||||||||||    
T  2010549 ttcaagctctctgattgtggtgtgatcagtgtgactgcttttgataggtagatttttcatct 2010610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 129 - 390
Target Start/End: Original strand, 2019574 - 2019823
Alignment:
Q  129 gcttgccaattagggatgttgtgagaacaagtgttttatcaaacaaatggaggtacaaatggatcacaataccaaatcttgtgtttgattcacaatgtgt 228  Q
    ||||||| |||||||| | ||||||||||||||||||||| |||||||||||||||||||||  |||||| ||||||||||| ||| ||  |||| ||||    
T  2019574 gcttgcctattagggacgctgtgagaacaagtgttttatccaacaaatggaggtacaaatgggccacaatgccaaatcttgtatttaataaacaacgtgt 2019673  T
Q  229 gtctgcaacatcgatttctgaccaccctgcagctatcaagagaaagcttttggcaattatcgaccatgtacttttactttattctgggccaatcaacaag 328  Q
     ||||||||| |            ||||   | ||||    ||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||    
T  2019674 ctctgcaacagc------------cccttttgttatcggaggaaagcttttggcaattattgatcatgtacttttactttattccgggccaatcaacaag 2019761  T
Q  329 ttcaagctctctgattgtgttgtgatcagtgcgactgctcttgataggtggatttttcatct 390  Q
    ||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||    
T  2019762 ttcaagctctctgattgtggtgtgatcagtgtgactgctcttgacaggtggatttttcatct 2019823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 130 - 390
Target Start/End: Original strand, 2006258 - 2006527
Alignment:
Q  130 cttgccaattagggatgttgtgagaacaagtgttttatcaaacaaatggaggtacaaatggatcacaataccaaatcttgtgtttgattcacaatgtgtg 229  Q
    ||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||  |||||||||||||||||||||||||  |||||||||     
T  2006258 cttgccaattagggaagctgtgagaacaagtgttttatccaacaaatggaggtacaaatgggccacaataccaaatcttgtgtttgataaacaatgtgtc 2006357  T
Q  230 tctgcaacatcga---tttctgaccaccctgcagctatcaagagaaagcttttggcaattatcgaccatgtacttttactttattctgggccaatcaaca 326  Q
    ||||||||||| |    ||| || |    |  || |||  || |||||||| ||| |||||| || || |||||||||||||||||||||||||||||||    
T  2006358 tctgcaacatccaaatgttccgaactttttttagatatggagggaaagcttatggaaattattgatcaggtacttttactttattctgggccaatcaaca 2006457  T
Q  327 agttcaagctctctgattgtgttg------tgatcagtgcgactgctcttgataggtggatttttcatct 390  Q
    ||||| || |||||  ||||| ||      | || |||| ||||||||||||||||||||||||||||||    
T  2006458 agttccagatctctcgttgtggtgtcaatctcattagtgagactgctcttgataggtggatttttcatct 2006527  T

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Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 131 - 339
Target Start/End: Complemental strand, 6601981 - 6601779
Alignment:
Q  131 ttgccaattagggatgttgtgagaacaagtgttttatcaaacaaatggaggtacaaatggatcacaataccaaatcttgtgtttgattcacaatgtgtgt 230  Q
    |||||||||| ||| |  |||||||||||| ||||||||| |||||||||||||||||||  |||| | ||||||||||||||||||   |||||| | |    
T  6601981 ttgccaattaaggaagcagtgagaacaagtattttatcaaccaaatggaggtacaaatgggccacacttccaaatcttgtgtttgatagccaatgtatct 6601882  T
Q  231 ctgcaacatcgatttctgaccaccctgcagctatcaagagaaagcttttggcaattatcgaccatgtacttttactttattctgggccaatcaacaagtt 330  Q
    | |  ||      ||||||  ||| |  || ||||||||| || |||| |  |||||| || ||||||||||||||  |||||||||||||||| |||||    
T  6601881 ccgacac------ttctgaagaccttttagttatcaagagcaaactttcgagaattattgatcatgtacttttactccattctgggccaatcaaaaagtt 6601788  T
Q  331 caagctctc 339  Q
    |||||||||    
T  6601787 caagctctc 6601779  T

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Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 152 - 217
Target Start/End: Complemental strand, 6592708 - 6592643
Alignment:
Q  152 agaacaagtgttttatcaaacaaatggaggtacaaatggatcacaataccaaatcttgtgtttgat 217  Q
    ||||||||| ||||||| | ||| |||||||||||||||| |||| | ||||||||||||||||||    
T  6592708 agaacaagtattttatctaccaactggaggtacaaatggaccacacttccaaatcttgtgtttgat 6592643  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 293 - 330
Target Start/End: Complemental strand, 2948534 - 2948497
Alignment:
Q  293 catgtacttttactttattctgggccaatcaacaagtt 330  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  2948534 catgtacttttacttcattctgggccaatcaacaagtt 2948497  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 293 - 330
Target Start/End: Original strand, 3340472 - 3340509
Alignment:
Q  293 catgtacttttactttattctgggccaatcaacaagtt 330  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  3340472 catgtacttttacttcattctgggccaatcaacaagtt 3340509  T

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Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 149 - 214
Target Start/End: Original strand, 3372513 - 3372578
Alignment:
Q  149 gtgagaacaagtgttttatcaaacaaatggaggtacaaatggatcacaataccaaatcttgtgttt 214  Q
    |||||||||||||||||||| | ||  |||||| ||||||||  |||| |||||||||||||||||    
T  3372513 gtgagaacaagtgttttatccagcagctggaggaacaaatggtacacactaccaaatcttgtgttt 3372578  T

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Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 4323180 - 4323139
Alignment:
Q  293 catgtacttttactttattctgggccaatcaacaagttcaag 334  Q
    ||||||||||||||| |||||||||||||||||| |||||||    
T  4323180 catgtacttttacttcattctgggccaatcaacatgttcaag 4323139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 267 - 328
Target Start/End: Complemental strand, 9819002 - 9818941
Alignment:
Q  267 agagaaagcttttggcaattatcgaccatgtacttttactttattctgggccaatcaacaag 328  Q
    |||||||| |||||  |||||| || ||||||||||||||| |||| |||||||||||||||    
T  9819002 agagaaagtttttgagaattattgatcatgtacttttacttcattccgggccaatcaacaag 9818941  T

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Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 330
Target Start/End: Original strand, 3349336 - 3349383
Alignment:
Q  283 aattatcgaccatgtacttttactttattctgggccaatcaacaagtt 330  Q
    |||||| || ||||||||||||||| ||||||||| ||||||||||||    
T  3349336 aattattgatcatgtacttttacttcattctgggctaatcaacaagtt 3349383  T

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Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 217
Target Start/End: Original strand, 3361514 - 3361609
Alignment:
Q  122 ttgtcatgcttgccaattagggatgttgtgagaacaagtgttttatcaaacaaatggaggtacaaatggatcacaataccaaatcttgtgtttgat 217  Q
    ||||||| ||||||||| | ||| |  |||||||||||| ||||||| | |||||||||  ||||||||  |||  ||||||||||||| ||||||    
T  3361514 ttgtcatacttgccaatcaaggaagcagtgagaacaagtattttatccagcaaatggagtaacaaatggtacacgctaccaaatcttgtatttgat 3361609  T

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Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 321
Target Start/End: Original strand, 3378667 - 3378726
Alignment:
Q  262 tatcaagagaaagcttttggcaattatcgaccatgtacttttactttattctgggccaat 321  Q
    |||| |||| ||| |||||  ||||||||| ||||||||||||||| |||||||||||||    
T  3378667 tatcgagagcaagtttttgagaattatcgatcatgtacttttacttcattctgggccaat 3378726  T

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Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 331
Target Start/End: Original strand, 3361682 - 3361720
Alignment:
Q  293 catgtacttttactttattctgggccaatcaacaagttc 331  Q
    ||||||||||||||| ||| |||||||||||||||||||    
T  3361682 catgtacttttacttcattatgggccaatcaacaagttc 3361720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 340
Target Start/End: Complemental strand, 6592604 - 6592526
Alignment:
Q  262 tatcaagagaaagcttttggcaattatcgaccatgtacttttactttattctgggccaatcaacaagttcaagctctct 340  Q
    ||||||||| |||||||    |||||| || ||||||||||||||   |||||| |||||||| |||||||||||||||    
T  6592604 tatcaagagcaagctttcaagaattattgatcatgtacttttactccgttctggaccaatcaaaaagttcaagctctct 6592526  T

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Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 218
Target Start/End: Complemental strand, 3218754 - 3218661
Alignment:
Q  125 tcatgcttgccaattagggatgttgtgagaacaagtgttttatcaaacaaatggaggtacaaatggatcacaataccaaatcttgtgtttgatt 218  Q
    |||| ||||||||||||||| |  |||| |||||||||||| || |   |||||||| | ||||||  |||| |||||||| ||||||||||||    
T  3218754 tcatacttgccaattagggaagcagtgaaaacaagtgttttgtccagtgaatggaggaataaatggcacacactaccaaatattgtgtttgatt 3218661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 234
Target Start/End: Complemental strand, 4323340 - 4323236
Alignment:
Q  130 cttgccaattagggatgttgtgagaacaagtgttttatcaaacaaatggaggtacaaatggatcacaataccaaatcttgtgtttgattcacaatgtgtg 229  Q
    |||||| |||||||| |  ||||||||||||||||| || |  || |||||| | ||||||   ||| | |||||||||||| |||||  ||||||||||    
T  4323340 cttgccgattagggacgcagtgagaacaagtgttttgtcgaggaattggaggaaaaaatggtatacacttccaaatcttgtgcttgatagacaatgtgtg 4323241  T
Q  230 tctgc 234  Q
    |||||    
T  4323240 tctgc 4323236  T

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Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 123 - 217
Target Start/End: Original strand, 39273846 - 39273940
Alignment:
Q  123 tgtcatgcttgccaattagggatgttgtgagaacaagtgttttatcaaacaaatggaggtacaaatggatcacaataccaaatcttgtgtttgat 217  Q
    |||| ||||||||||||||||| |  ||||||||||||||||| || | | |||||||||||||||||  |||| ||||||||||||||||||||    
T  39273846 tgtcttgcttgccaattagggaagcagtgagaacaagtgttttgtccagccaatggaggtacaaatggtacacactaccaaatcttgtgtttgat 39273940  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 130 - 226
Target Start/End: Original strand, 20934264 - 20934360
Alignment:
Q  130 cttgccaattagggatgttgtgagaacaagtgttttatcaaacaaatggaggtacaaatggatcacaataccaaatcttgtgtttgattcacaatgt 226  Q
    ||||||||||||||| |  |||||||||||||||||||| || ||||||||| ||||||||  |||| | ||||||||||||||||||  |||||||    
T  20934264 cttgccaattagggaagcagtgagaacaagtgttttatctaaaaaatggaggaacaaatggtacacactcccaaatcttgtgtttgatagacaatgt 20934360  T

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Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 130 - 217
Target Start/End: Original strand, 20952808 - 20952895
Alignment:
Q  130 cttgccaattagggatgttgtgagaacaagtgttttatcaaacaaatggaggtacaaatggatcacaataccaaatcttgtgtttgat 217  Q
    ||||| |||||||||||  |||||||||||||||||||| |  ||||||||| ||||||||| |||| | ||||||||||||||||||    
T  20952808 cttgcaaattagggatgcagtgagaacaagtgttttatctagaaaatggaggaacaaatggaacacacttccaaatcttgtgtttgat 20952895  T

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Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 290 - 344
Target Start/End: Original strand, 20923438 - 20923492
Alignment:
Q  290 gaccatgtacttttactttattctgggccaatcaacaagttcaagctctctgatt 344  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  20923438 gaccatgtacttttacttcattctgggccaatcaacaagttcaagatctctgatt 20923492  T

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Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 42824078 - 42824127
Alignment:
Q  21 ataaatagttgaattttaaatgaagtcagagaaaatgaaagaagtggtat 70  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  42824078 ataaatacttgaattttaaatgaagtcggagaaaatgaaagaagtggtat 42824127  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 132 - 234
Target Start/End: Original strand, 20926881 - 20926984
Alignment:
Q  132 tgccaattagggatgttgtgagaacaagtgttttatc-aaacaaatggaggtacaaatggatcacaataccaaatcttgtgtttgattcacaatgtgtgt 230  Q
    ||||||||||||| |  | |||||||||||||||||| ||| ||||||||| ||||| ||  |||| ||||||||||||| ||||||   |||||||| |    
T  20926881 tgccaattagggaagcagcgagaacaagtgttttatctaaaaaaatggaggaacaaagggtacacactaccaaatcttgtctttgatagtcaatgtgtct 20926980  T
Q  231 ctgc 234  Q
    ||||    
T  20926981 ctgc 20926984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 293 - 343
Target Start/End: Original strand, 20952962 - 20953012
Alignment:
Q  293 catgtacttttactttattctgggccaatcaacaagttcaagctctctgat 343  Q
    ||||||||||||||| |||||||||||||||||| ||||||| ||| ||||    
T  20952962 catgtacttttacttcattctgggccaatcaacatgttcaagttctatgat 20953012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 234
Target Start/End: Original strand, 20923302 - 20923385
Alignment:
Q  151 gagaacaagtgttttatcaaacaaatggaggtacaaatggatcacaataccaaatcttgtgtttgattcacaatgtgtgtctgc 234  Q
    |||||||||||||||||| |||||||||||| | ||||||  ||||  |||  |||||||||| |||  ||||||||| |||||    
T  20923302 gagaacaagtgttttatctaacaaatggaggaaaaaatggtccacacaaccggatcttgtgttcgataaacaatgtgtatctgc 20923385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 347
Target Start/End: Original strand, 20927040 - 20927094
Alignment:
Q  293 catgtacttttactttattctgggccaatcaacaagttcaagctctctgattgtg 347  Q
    ||||| ||||||||| ||| |||||||||||||| ||||||| ||||||| ||||    
T  20927040 catgtccttttacttcattatgggccaatcaacatgttcaagttctctgagtgtg 20927094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 330
Target Start/End: Original strand, 17969825 - 17969862
Alignment:
Q  293 catgtacttttactttattctgggccaatcaacaagtt 330  Q
    ||||||||||||||| |||| |||||||||||||||||    
T  17969825 catgtacttttacttcattcagggccaatcaacaagtt 17969862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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