View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0532_low_13 (Length: 454)
Name: NF0532_low_13
Description: NF0532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0532_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 16 - 425
Target Start/End: Complemental strand, 32689154 - 32688737
Alignment:
| Q |
16 |
acatagagaagaatcatagatatagataaggcgcagaggcatgtgaaggcagaccgtgcttaagaatttattcaccgaaga--------caaacatttcc |
107 |
Q |
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| T |
32689154 |
acatagagaagaatcatagatatagataaggcgcagaggcatgtgaaggcagaccgtgcttaagaatttattcaccgaagagtcgaagacaaacatttcc |
32689055 |
T |
|
| Q |
108 |
agaattcgacaggctccacgaagaataatctcaagtaacataactacggaaaatccttgtggttaactcatacagaaaatgcttgttttaataggtaagt |
207 |
Q |
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| T |
32689054 |
agaattcaacaggctccacgaagaataatctcaagtaacataactacggaaaatccttgtggttaactcatacagaaaatgcttgttttaataggtaagt |
32688955 |
T |
|
| Q |
208 |
aggtggggtttaaatagagagaattttatattcttcagttagtgatgtgggaattcatgattttaaacttttcacatataactaaatatccaacggaaac |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32688954 |
aggtggggtttaaatagagagaattttatattcttcagttagtgatgtgggaattcatgattttaaacttttcacatataactaaatatccaacggaaac |
32688855 |
T |
|
| Q |
308 |
cagaactaacgttctcctcagttccaagttcatattttcttgattttcagttttcacttttaagcaaatgaaacctaatgttgttatgtcagtgtgtttg |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
32688854 |
cagaactaacgttctcctcagttccaagttcatattttcttgattttcagttttcacttttaagcaaatgaaacctcatgtcgttatgtcagtgtgtttg |
32688755 |
T |
|
| Q |
408 |
gttctcccatgagcaatt |
425 |
Q |
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| T |
32688754 |
gttctcccatgagcaatt |
32688737 |
T |
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