View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0532_low_15 (Length: 397)
Name: NF0532_low_15
Description: NF0532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0532_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 81 - 237
Target Start/End: Complemental strand, 34062706 - 34062548
Alignment:
| Q |
81 |
ttctagcacaacaagcaagtttcagagagattcgtgttttgtgagaaactctctcaatgcaacaagaattttgcatttgatcattgatgagattgagaga |
180 |
Q |
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| T |
34062706 |
ttctagcacaacaagcaagtttcagagagattcgtgttttgtgagaaaccctctcaatgcaacaagaattttgcatttgatcattgatgagattgagaga |
34062607 |
T |
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| Q |
181 |
gattcgtg--tgtggtttcataatcttttataccattcaacaatgaacatagtcttaat |
237 |
Q |
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| T |
34062606 |
gattcgtgtgtgtggtttcataatcttttataccattcaacaatgaacctagtcttaat |
34062548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 308 - 369
Target Start/End: Complemental strand, 34062482 - 34062421
Alignment:
| Q |
308 |
gaaaatcactaaatggctagacatcttatcgctatttctctttattctgtgttaaagctttt |
369 |
Q |
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| T |
34062482 |
gaaaatcactaaatggctagacatcttatcgctatttctctttattctgtgttaaagctttt |
34062421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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