View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0532_low_17 (Length: 384)
Name: NF0532_low_17
Description: NF0532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0532_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 8 - 355
Target Start/End: Complemental strand, 4756939 - 4756592
Alignment:
| Q |
8 |
agaaatgaagatggtagtgatgacttcaaaagcaaactttctcatctctttaagaaactcacatggtgtgttcattttagacaactcttctaaatgtttc |
107 |
Q |
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| T |
4756939 |
agaaatgaagatggtagtgatgacttcaaaagcaaactttctcatctctttaagaaactcacatggtgtgttcattttagacaactcttctaaatgtttc |
4756840 |
T |
|
| Q |
108 |
acagcactatcctcaatgagaccaatataagttgacaatgcttcgtcaccatttatgggagaagtgattaaacgtctcaaacgtttgtgttcagaatttg |
207 |
Q |
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| T |
4756839 |
acagcactatcctcaatgagactaatataagttgacaatgcttcgtcaccatttatgggagaagtgattaaacgtctcaaacgtttgtgttcagaatttg |
4756740 |
T |
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| Q |
208 |
agattccatggaatgatcttttacctgtaaggaccatggttgaatgagggtatccaaccttgagattctcttcgtcggttagaaccttacgacatgtctc |
307 |
Q |
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| T |
4756739 |
agattccatggaatgatcttttacctgtaaggaccatggttgaatgagggtatccaaccttgagattctcttcgtcggttagaaccttacgacatgtctc |
4756640 |
T |
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| Q |
308 |
tggtgtgcatactatgatgcttggactcccaaacaaatgtgttctata |
355 |
Q |
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| T |
4756639 |
tggtgtgcatactatgatgcttggactaccaaacaaatgtgttctata |
4756592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 23 - 349
Target Start/End: Complemental strand, 4749086 - 4748763
Alignment:
| Q |
23 |
agtgatgacttcaaaagcaaactttctcatctctttaagaaactcacatggtgtgttcattttagacaactcttctaaatgtttcacagcactatcctca |
122 |
Q |
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||||||||| ||||||| |||||| | |||||| ||||||||| ||||||||| |||||||| | |||||||||| |||||| || |||| || |
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| T |
4749086 |
agtgatgacatcaaaagtgaactttttggcctctttgagaaactcaaccggtgtgttcgttttagacgaatcttctaaatttttcactacaatatcttct |
4748987 |
T |
|
| Q |
123 |
atgagaccaatataagttgacaatgcttcgtcaccatttatgggagaagtgattaaacgtctcaaacgtttgtgttcagaatttgagattccatggaatg |
222 |
Q |
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||||||||||||||| | ||||| |||| ||||||||| ||||| ||| ||| || ||||||||| || || | | |||| ||||||||||||| |
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| T |
4748986 |
atgagaccaatataattgtacaat---tcgtgaccatttattggagacgtggttacctttcgcaaacgtttatgctcggcacttgatattccatggaatg |
4748890 |
T |
|
| Q |
223 |
atcttttacctgtaaggaccatggttgaatgagggtatccaaccttgagattctcttcgtcggttagaaccttacgacatgtctctggtgtgcatactat |
322 |
Q |
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|| |||| |||| ||| |||| | |||| ||||||||| |||||||| || ||||| |||| || ||||||||||||||||| | ||| ||||| |
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| T |
4748889 |
attttttccctgcaagtgccatagctgaagcagggtatcctggcttgagatgttcctcgtcttttagtacattacgacatgtctctggcgagcaaactat |
4748790 |
T |
|
| Q |
323 |
gatgcttggactcccaaacaaatgtgt |
349 |
Q |
| |
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|| | ||||| ||||||||||||||| |
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| T |
4748789 |
gacggttggatacccaaacaaatgtgt |
4748763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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