View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0532_low_2 (Length: 709)
Name: NF0532_low_2
Description: NF0532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0532_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 497; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 12 - 693
Target Start/End: Original strand, 42823974 - 42824656
Alignment:
| Q |
12 |
agagacaccagcaccacaccaaaccatagagtcaaaaaaggtgtgtcttctaacattatgtaaatttggatg----------tattatatatcttaatta |
101 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
42823974 |
agaggcaccagcaccacaccaaaccatagagtcaaaaaaggtgtgtcttctaacattatgtaaatttggatgcattgtattgtattatatatcttaatta |
42824073 |
T |
|
| Q |
102 |
acatataaataaatagttgaattttaaatgaagtcagagaaaatgaaagaagtggtatnnnnnnnnnnnnnnnnnagagatattgggataagcagcaaca |
201 |
Q |
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| T |
42824074 |
acatataaatac----ttgaattttaaatgaagtcggagaaaatgaaagaagtggtatatgatgatgat------agagatattgggataagcagcaaca |
42824163 |
T |
|
| Q |
202 |
agatagggtcaagtccaccaagctgtgagcacaagtgttatggatgtaatccatgtgaagccattcaagttccaagtactgaaagcagtaagagaaatca |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42824164 |
agatagggtcaagtccaccaagctgtgagcacaagtgttatggatgcaatccatgtgaagccattcaagttccaagtactgaaagcagtaagagaaatca |
42824263 |
T |
|
| Q |
302 |
tttgggtcttcagtatgcaaattatgagcctgaaagctggaaatgcaaatgtggtccttccttctacagtccatgatcattctatattctaatattaatt |
401 |
Q |
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| T |
42824264 |
tttgggtcttcagtatgcaaattatgagcctgaaagctggaaatgcaaatgtggtccttccttctacagtccatgatcattctatattctaatattaatt |
42824363 |
T |
|
| Q |
402 |
attaattatccattaattcaatgtagtatatagttcatctgttaggttcatattatatatattttcttccctttgtacaaatattaaagttcaaaggatt |
501 |
Q |
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| T |
42824364 |
attaattatccattaattcaatgtagtatatagttcatctgttaggttcatattatatatattttcttccctttgtacaaatattaaagttcaaaggatt |
42824463 |
T |
|
| Q |
502 |
tcattattattaattaatttgtggttggaattgttggatgacttattatgctacagagccttgtagaactttttgttttttgtcaaactagaaaaggaaa |
601 |
Q |
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| T |
42824464 |
tcattattattaattaatttgtggttggaattgttggatgacttattatgctacagagccttgtagaactttttgttttttgtcaaactagaaaaggaaa |
42824563 |
T |
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| Q |
602 |
aatggataa-nnnnnnnnnnnnngaaagagaaattatgaagnnnnnnntattgacgaaaaaagaacatttaattctaataattttactagtgt |
693 |
Q |
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| T |
42824564 |
aatggataattttttttttttttgaaagagaaattatgaagaaaaaaatattgacgaaaaaagaacattcaattctaataattttactagtgt |
42824656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 314 - 373
Target Start/End: Original strand, 6026272 - 6026331
Alignment:
| Q |
314 |
gtatgcaaattatgagcctgaaagctggaaatgcaaatgtggtccttccttctacagtcc |
373 |
Q |
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| T |
6026272 |
gtatgcaaattatgagcctgagagttggaaatgcaagtgtggtccttcattctatagtcc |
6026331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 277
Target Start/End: Original strand, 6026174 - 6026247
Alignment:
| Q |
204 |
atagggtcaagtccaccaagctgtgagcacaagtgttatggatgtaatccatgtgaagccattcaagttccaag |
277 |
Q |
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| T |
6026174 |
atagggtcaagtccaccaagctgtgagcataaatgctatgattgttttccatgtgaagctactcaagtgccaag |
6026247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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