View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0532_low_23 (Length: 354)
Name: NF0532_low_23
Description: NF0532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0532_low_23 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 295; Significance: 1e-166; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 29 - 323
Target Start/End: Original strand, 1560618 - 1560912
Alignment:
| Q |
29 |
ccaacaatattgtgcaactcgtgcaaatgtacatgtatcatttacaatttaatacataaagatgttgacactcaagataaaaatgaaccttcctagtcaa |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1560618 |
ccaacaatattgtgcaactcgtgcaaatgtacatgtatcatttacaatttaatacataaagatgttgacactcaagataaaaatgaaccttcctagtcaa |
1560717 |
T |
|
| Q |
129 |
atttgtttctcaaaagcgtcgaagatttcttatctttaataagaatttgagtaaaggctaatgatggttcaaggtactttctttgacagccaacaatttg |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1560718 |
atttgtttctcaaaagcgtcgaagatttcttatctttaataagaatttgagtaaaggctaatgatggttcaaggtactttctttgacagccaacaatttg |
1560817 |
T |
|
| Q |
229 |
tccagttatggtaccaaaagtcggtaactctacaccgcaattaggagcgaaaacttcaacgaaatcgtcttcgggaggtttagagttgacaatat |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1560818 |
tccagttatggtaccaaaagtcggtaactctacaccgcaattaggagcgaaaacttcaacgaaatcgtcttcgggaggtttagagttgacaatat |
1560912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 129 - 320
Target Start/End: Original strand, 2091117 - 2091308
Alignment:
| Q |
129 |
atttgtttctcaaaagcgtcgaagatttcttatctttaataagaatttgagtaaaggctaatgatggttcaaggtactttctttgacagccaacaatttg |
228 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
2091117 |
atttgtttctcaaaagcgacaaagatttcttatctttaataagaatttgagaaaatgctaatgatggttcaaggtactttctttgacagccaacaatgtg |
2091216 |
T |
|
| Q |
229 |
tccagttatggtaccaaaagtcggtaactctacaccgcaattaggagcgaaaacttcaacgaaatcgtcttcgggaggtttagagttgacaa |
320 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
2091217 |
tccagttatggtaccgaaagtcggtaactctataccgcaattaggagcgaaaacttcaacgaaatcatcttcgggaggtttgcagttgacaa |
2091308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 29 - 132
Target Start/End: Original strand, 2090577 - 2090680
Alignment:
| Q |
29 |
ccaacaatattgtgcaactcgtgcaaatgtacatgtatcatttacaatttaatacataaagatgttgacactcaagataaaaatgaaccttcctagtcaa |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2090577 |
ccaacaatattgtgcaactcgtgcaaatgtacatgtatcatttacaatttaatacataaatatgttgacactcaagataaaaatgaaccttcctagtcaa |
2090676 |
T |
|
| Q |
129 |
attt |
132 |
Q |
| |
|
|||| |
|
|
| T |
2090677 |
attt |
2090680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1212 times since January 2019
Visitors: 3642