View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0532_low_25 (Length: 345)
Name: NF0532_low_25
Description: NF0532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0532_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 183 - 316
Target Start/End: Original strand, 43837043 - 43837176
Alignment:
| Q |
183 |
tttgggagaaaagtagttaacctttagaaaggaaacattatggaaaaatatatatcatgatgccttgcttgagcattttcaaacattcttccgtgtcccc |
282 |
Q |
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| T |
43837043 |
tttgggagaaaagtagttaacctttagaaaggaaacattatggaaaaatatatatcaggatgccttgcttgagcattttcaaacattcttccgtgtcccc |
43837142 |
T |
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| Q |
283 |
cacttttttgggtgatgcagatgtaatttagatt |
316 |
Q |
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| T |
43837143 |
ctcttttttgggtgattcagatgtaatttagatt |
43837176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 183 - 316
Target Start/End: Original strand, 39871994 - 39872130
Alignment:
| Q |
183 |
tttgggagaaaagtagtt---aacctttagaaaggaaacattatggaaaaatatatatcatgatgccttgcttgagcattttcaaacattcttccgtgtc |
279 |
Q |
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|||||||||||||||||| |||||| |||||||||||||||||||||||||||| | | |||||||||||||||||||||||||| |||||| | || |
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| T |
39871994 |
tttgggagaaaagtagttgttaaccttcagaaaggaaacattatggaaaaatatatgttaggatgccttgcttgagcattttcaaactttcttcagcttc |
39872093 |
T |
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| Q |
280 |
ccccacttttttgggtgatgcagatgtaatttagatt |
316 |
Q |
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|||| |||||||||||||| ||||||||||||||||| |
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| T |
39872094 |
cccctcttttttgggtgatccagatgtaatttagatt |
39872130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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