View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0532_low_3 (Length: 592)
Name: NF0532_low_3
Description: NF0532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0532_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 468; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 4 - 565
Target Start/End: Complemental strand, 50275530 - 50274988
Alignment:
| Q |
4 |
tcaatctgcagcattcttgtcaacaggctgaagatgcattatctcaaggcatggaagctttgcaacaatctctttcagagacactttcctccacgtccac |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50275530 |
tcaatctgcagcattcttgtcaacaggctgaagatgcattatctcaaggaatggaaggtttgcaacaatctctttcagagacactttcctccacgtccac |
50275431 |
T |
|
| Q |
104 |
tggatctggaaatgttgctgagtatatgggtcaaatggctctttcaatggccaagctttccagactggagactttcattcatcaggtaattaattaagac |
203 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50275430 |
tggatctggaaatgttgttgagtatatgggtcaaatggctctttcaatggccaagctttccacactggagactttcattcatcaggtaattaattaagac |
50275331 |
T |
|
| Q |
204 |
aatgtaatcttgatcactcaacattatcttattccacatttaattgagagtgataacattttgagcattattgtttttcttaggcggatatcttgaggca |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
50275330 |
aatgtaatcttgatcactcaacattatcttattccacatttaattgagagtgataacattttgagcattattgtttttcttaggcagatatcttgaggca |
50275231 |
T |
|
| Q |
304 |
acaaacactgcaacagatgcgtcgaattttgactgcgcaccaagctgctcgtgctctccttgtcataaatgatttcatttcacgaatccgagctctgaat |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
50275230 |
acaaacactgcaacagatgcgtcgaattttgactgcgcaccaagctgctcgtgctctccttgtcataaatgatttcatttcacgaatcagagctcttaat |
50275131 |
T |
|
| Q |
404 |
ttattatggtcagcatttcctaaagaatactaaaggaattgacacattctatagtgcataactagtgtgtaggcgaataattgacgtattgataaatgtt |
503 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50275130 |
tcattatggtcagcatttcctaaagaatactaaaggaattgacacattctatagtgcataactagtgtgtaggcgaataattgacgtattgat------- |
50275038 |
T |
|
| Q |
504 |
gtgaatatcatcacattcaaggggatgttatgttgtgacagtgctacgcttgaaactaattg |
565 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50275037 |
------------acattcaaggggatgttatgttgtgacagtgctacgcttgaaactaattg |
50274988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 4 - 565
Target Start/End: Complemental strand, 50279554 - 50279012
Alignment:
| Q |
4 |
tcaatctgcagcattcttgtcaacaggctgaagatgcattatctcaaggcatggaagctttgcaacaatctctttcagagacactttcctccacgtccac |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50279554 |
tcaatctgcagcattcttgtcaacaggctgaagatgcattatctcaaggaatggaaggtttgcaacaatctctttcagagacactttcctccacgtccac |
50279455 |
T |
|
| Q |
104 |
tggatctggaaatgttgctgagtatatgggtcaaatggctctttcaatggccaagctttccagactggagactttcattcatcaggtaattaattaagac |
203 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50279454 |
tggatctggaaatgttgttgagtatatgggtcaaatggctctttcaatggccaagctttccacactggagactttcattcatcaggtaattaattaagac |
50279355 |
T |
|
| Q |
204 |
aatgtaatcttgatcactcaacattatcttattccacatttaattgagagtgataacattttgagcattattgtttttcttaggcggatatcttgaggca |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
50279354 |
aatgtaatcttgatcactcaacattatcttattccacatttaattgagagtgataacattttgagcattattgtttttcttaggcagatatcttgaggca |
50279255 |
T |
|
| Q |
304 |
acaaacactgcaacagatgcgtcgaattttgactgcgcaccaagctgctcgtgctctccttgtcataaatgatttcatttcacgaatccgagctctgaat |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
50279254 |
acaaacactgcaacagatgcgtcgaattttgactgcgcaccaagctgctcgtgctctccttgtcataaatgatttcatttcacgaatcagagctcttaat |
50279155 |
T |
|
| Q |
404 |
ttattatggtcagcatttcctaaagaatactaaaggaattgacacattctatagtgcataactagtgtgtaggcgaataattgacgtattgataaatgtt |
503 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50279154 |
tcattatggtcagcatttcctaaagaatactaaaggaattgacacattctatagtgcataactagtgtgtaggcgaataattgacgtattgat------- |
50279062 |
T |
|
| Q |
504 |
gtgaatatcatcacattcaaggggatgttatgttgtgacagtgctacgcttgaaactaattg |
565 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50279061 |
------------acattcaaggggatgttatgttgtgacagtgctacgcttgaaactaattg |
50279012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 94
Target Start/End: Original strand, 22610624 - 22610691
Alignment:
| Q |
27 |
caggctgaagatgcattatctcaaggcatggaagctttgcaacaatctctttcagagacactttcctc |
94 |
Q |
| |
|
|||||||| ||||| |||||||| ||||||||||| ||| |||||||||||| ||| ||||||||||| |
|
|
| T |
22610624 |
caggctgaggatgctttatctcacggcatggaagcattgaaacaatctcttttagaaacactttcctc |
22610691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1237 times since January 2019
Visitors: 3642