View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0532_low_31 (Length: 313)

Name: NF0532_low_31
Description: NF0532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0532_low_31
NF0532_low_31
[»] chr5 (15 HSPs)
chr5 (46-237)||(30678634-30678826)
chr5 (46-237)||(29870706-29870888)
chr5 (46-237)||(30481852-30482034)
chr5 (46-165)||(30058817-30058936)
chr5 (46-164)||(30714551-30714669)
chr5 (84-237)||(30434380-30434524)
chr5 (82-237)||(30339926-30340086)
chr5 (82-237)||(30748199-30748345)
chr5 (84-158)||(30243845-30243919)
chr5 (56-166)||(29851832-29851942)
chr5 (196-237)||(30243773-30243814)
chr5 (196-237)||(30398675-30398716)
chr5 (196-236)||(17419293-17419333)
chr5 (183-232)||(30058936-30058985)
chr5 (82-150)||(30058594-30058667)
[»] chr7 (1 HSPs)
chr7 (56-237)||(26705791-26705965)
[»] chr4 (2 HSPs)
chr4 (196-237)||(20298148-20298189)
chr4 (54-114)||(20298245-20298305)
[»] chr1 (1 HSPs)
chr1 (196-236)||(7098007-7098047)


Alignment Details
Target: chr5 (Bit Score: 137; Significance: 2e-71; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 46 - 237
Target Start/End: Complemental strand, 30678826 - 30678634
Alignment:
Q  46 ataaagatttttgagcagttgaaatccaaacataagaaggggaaattgagatcctaccagtaaaattgatttttgcgatggtgattgaggcagat-aagg 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||| ||||    
T  30678826 ataaagatttttgagcagttgaaatccaaacataagaaggggaaattgagatcctaccagtaaaatatatttttgcgatggtgattaaggcagataaagg 30678727  T
Q  145 gtaaacgtctctgcttcttaatccaaccattcattcttaaactctatttgaggaatatgagctatcttgtcccaatcctcccctgttccctct 237  Q
    ||||||||||||||||||||||||  |||||||  |||||||| |||||  ||||||||||||||||||||||||||||||||  ||||||||    
T  30678726 gtaaacgtctctgcttcttaatcctcccattcaaacttaaactgtatttttggaatatgagctatcttgtcccaatcctcccccattccctct 30678634  T

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Target: chr5; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 46 - 237
Target Start/End: Original strand, 29870706 - 29870888
Alignment:
Q  46 ataaagatttttgagcagttgaaatccaaacataagaaggggaaattgagatcctaccagtaaaattgatttttgcgatggtgattgaggcagataaggg 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||    
T  29870706 ataaagatttttgagcagttgaaatccaaacataagaaggggaaattgagatcctacaagtaaaattgatttttgcgatgttgattgtggcagataaggg 29870805  T
Q  146 taaacgtctctgcttcttaatccaaccattcattcttaaactctatttgaggaatatgagctatcttgtcccaatcctcccctgttccctct 237  Q
    |||||||||||||||||||||||         |   |||||| ||||   ||||||||||||||||||||||||||||||||||||||||||    
T  29870806 taaacgtctctgcttcttaatcc---------tcggtaaactgtattattggaatatgagctatcttgtcccaatcctcccctgttccctct 29870888  T

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Target: chr5; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 46 - 237
Target Start/End: Original strand, 30481852 - 30482034
Alignment:
Q  46 ataaagatttttgagcagttgaaatccaaacataagaaggggaaattgagatcctaccagtaaaattgatttttgcgatggtgattgaggcagataaggg 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||    
T  30481852 ataaagatttttgagcagttgaaatccaaacataagaaggggaaattgagatcttaccagtaaaattgatttttgcgatgttgattgtggcagataaggg 30481951  T
Q  146 taaacgtctctgcttcttaatccaaccattcattcttaaactctatttgaggaatatgagctatcttgtcccaatcctcccctgttccctct 237  Q
    |||||||||||||||||||||||         |   |||||| |||||  ||||||||||||||||||||||||||||||| ||||||||||    
T  30481952 taaacgtctctgcttcttaatcc---------tcggtaaactgtatttttggaatatgagctatcttgtcccaatcctcccatgttccctct 30482034  T

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Target: chr5; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 46 - 165
Target Start/End: Original strand, 30058817 - 30058936
Alignment:
Q  46 ataaagatttttgagcagttgaaatccaaacataagaaggggaaattgagatcctaccagtaaaattgatttttgcgatggtgattgaggcagataaggg 145  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  30058817 ataaagatttttgagcagttgaaatccaaacataagaaggggaaattgagatcctaccagtaaaattgatttttgcgatggttaatgaggcagataaggg 30058916  T
Q  146 taaacgtctctgcttcttaa 165  Q
    ||||||||||||||||||||    
T  30058917 taaacgtctctgcttcttaa 30058936  T

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Target: chr5; HSP #5
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 46 - 164
Target Start/End: Complemental strand, 30714669 - 30714551
Alignment:
Q  46 ataaagatttttgagcagttgaaatccaaacataagaaggggaaattgagatcctaccagtaaaattgatttttgcgatggtgattgaggcagataaggg 145  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||| |||||  | |||||||||||||||    
T  30714669 ataaagatttttgagcagttgaaatgcaaacataagaagggtaaatagagatcctaccagtaaaattgatttttgtgatggctaatgaggcagataaggg 30714570  T
Q  146 taaacgtctctgcttctta 164  Q
    |||||||||||||||||||    
T  30714569 taaacgtctctgcttctta 30714551  T

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Target: chr5; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 84 - 237
Target Start/End: Original strand, 30434380 - 30434524
Alignment:
Q  84 ggggaaattgagatcctaccagtaaaattgatttttgcgatggtgattgaggcagataagggtaaacgtctctgcttcttaatccaaccattcattctta 183  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |  | || ||           
T  30434380 ggggaaatagagatcctaccagtaaaatagatttttgcgatggtgattgaggcagataagggtaaacgtctctgcttcttaaac--atcaatc------- 30434470  T
Q  184 aactctatttgaggaatatgagctatcttgtcccaatcctcccctgttccctct 237  Q
    |||||||||   ||||||||||||||||||||||||||||||||||||||||||    
T  30434471 aactctattcttggaatatgagctatcttgtcccaatcctcccctgttccctct 30434524  T

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Target: chr5; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 82 - 237
Target Start/End: Complemental strand, 30340086 - 30339926
Alignment:
Q  82 aaggggaaattgagatcctaccagtaaaattgatttttgcgatggtgattgaggcagataagggtaaacgtctctgcttcttaatccaaccattcatt-- 179  Q
    |||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  || | ||| | |      
T  30340086 aaggggaaatagagatcttaccagtaaaattgaattttgcgatggtgattgaggcagataagggtaaacgtctctgcttcttaa-acatcaattaactct 30339988  T
Q  180 ----cttaaactctatttgaggaatatgagctatcttgtcccaatcctcccctgttccctct 237  Q
        |||||||| ||| |  ||||||||||||||||||||||||||||||||||||||||||    
T  30339987 atcacttaaactgtatatttggaatatgagctatcttgtcccaatcctcccctgttccctct 30339926  T

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Target: chr5; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 82 - 237
Target Start/End: Original strand, 30748199 - 30748345
Alignment:
Q  82 aaggggaaattgagatcctaccagtaaaattgatttttgcgatggtgattgaggcagataagggtaaacgtctctgcttcttaatccaaccattcattct 181  Q
    |||||||||| |||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||          |||    
T  30748199 aaggggaaatagagatcttaccagtaaaattgaattttgcgattgtgattgaggcagataagggtaaacgtctctgcttcttaatcc----------tct 30748288  T
Q  182 -taaactctatttgaggaatatgagctatcttgtcccaatcctcccctgttccctct 237  Q
     |||||  |||||  ||||||||||||||||||||||||||||||| ||||||||||    
T  30748289 gtaaacagtatttttggaatatgagctatcttgtcccaatcctcccatgttccctct 30748345  T

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Target: chr5; HSP #9
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 84 - 158
Target Start/End: Complemental strand, 30243919 - 30243845
Alignment:
Q  84 ggggaaattgagatcctaccagtaaaattgatttttgcgatggtgattgaggcagataagggtaaacgtctctgc 158  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30243919 ggggaaatagagatcctaccagtaaaattgatttttgcgatggtgattgaggcagataagggtaaacgtctctgc 30243845  T

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Target: chr5; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 56 - 166
Target Start/End: Original strand, 29851832 - 29851942
Alignment:
Q  56 ttgagcagttgaaatccaaacataagaaggggaaattgagatcctaccagtaaaattgatttttgcgatggtgattgagg-cagataagggtaaacgtct 154  Q
    |||||||||||||||||||| |||||||||  |||| |||| |||||||||||||| ||| ||||||||||||||||||| |||||||||||||| ||||    
T  29851832 ttgagcagttgaaatccaaatataagaagga-aaatagagagcctaccagtaaaatagatctttgcgatggtgattgaggccagataagggtaaatgtct 29851930  T
Q  155 ctgcttcttaat 166  Q
    ||||||||||||    
T  29851931 ctgcttcttaat 29851942  T

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Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 196 - 237
Target Start/End: Complemental strand, 30243814 - 30243773
Alignment:
Q  196 ggaatatgagctatcttgtcccaatcctcccctgttccctct 237  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  30243814 ggaatatgagctatcttgtcccaatcctcccctgttccctct 30243773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 196 - 237
Target Start/End: Original strand, 30398675 - 30398716
Alignment:
Q  196 ggaatatgagctatcttgtcccaatcctcccctgttccctct 237  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  30398675 ggaatatgagctatcttgtcccaatcctcccctgttccctct 30398716  T

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Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 17419333 - 17419293
Alignment:
Q  196 ggaatatgagctatcttgtcccaatcctcccctgttccctc 236  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  17419333 ggaatatgagctatcttgtcccaatcctccccggttccctc 17419293  T

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Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 232
Target Start/End: Original strand, 30058936 - 30058985
Alignment:
Q  183 aaactctatttgaggaatatgagctatcttgtcccaatcctcccctgttc 232  Q
    ||||| |||||  |||||||||| ||||||||||||||||||||||||||    
T  30058936 aaactgtatttttggaatatgagatatcttgtcccaatcctcccctgttc 30058985  T

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Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 150
Target Start/End: Original strand, 30058594 - 30058667
Alignment:
Q  82 aaggggaaattgagatcctaccagtaaa----attgatttttgcgatggtgattgagg-cagataagggtaaac 150  Q
    |||||||||| |||||| ||||||| ||    ||||| ||||||||||||||| |||| |||||||||||||||    
T  30058594 aaggggaaatagagatcttaccagttaagtgaattgaattttgcgatggtgatcgaggccagataagggtaaac 30058667  T

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Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 56 - 237
Target Start/End: Original strand, 26705791 - 26705965
Alignment:
Q  56 ttgagcagttgaaatccaaacataagaaggggaaattgagatcctaccagtaaaattgatttttgcgatggtgattgaggcagataagggtaaacgtctc 155  Q
    |||| ||||||||||||||||||||||||||||||  |||||| ||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  26705791 ttgaacagttgaaatccaaacataagaaggggaaacagagatcgtaccactaaaatagatttttgtgatggtgattgaggcagataagggtaaacgtctc 26705890  T
Q  156 t--gcttcttaatccaaccattcattcttaaactctatttgaggaatatgagctatcttgtcccaatcctcccctgttccctct 237  Q
    |  |||||||        ||||| |  | || || |||||  ||||||||||||||||||||||||||||||||||||||||||    
T  26705891 tgcgcttctt--------cattc-taataaatctttatttttggaatatgagctatcttgtcccaatcctcccctgttccctct 26705965  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 196 - 237
Target Start/End: Complemental strand, 20298189 - 20298148
Alignment:
Q  196 ggaatatgagctatcttgtcccaatcctcccctgttccctct 237  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  20298189 ggaatatgagctatcttgtcccaatcctcccctgttccctct 20298148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 54 - 114
Target Start/End: Complemental strand, 20298305 - 20298245
Alignment:
Q  54 ttttgagcagttgaaatccaaacataagaaggggaaattgagatcctaccagtaaaattga 114  Q
    ||||||| ||||||||||||||||||||||  |||||| |||||||||||| || ||||||    
T  20298305 ttttgagtagttgaaatccaaacataagaataggaaatagagatcctaccactataattga 20298245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 236
Target Start/End: Original strand, 7098007 - 7098047
Alignment:
Q  196 ggaatatgagctatcttgtcccaatcctcccctgttccctc 236  Q
    |||||||| |||||||||||||| || ||||||||||||||    
T  7098007 ggaatatgggctatcttgtcccagtcttcccctgttccctc 7098047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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