View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0532_low_34 (Length: 288)
Name: NF0532_low_34
Description: NF0532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0532_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 141; Significance: 6e-74; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 62 - 279
Target Start/End: Original strand, 27786884 - 27787106
Alignment:
| Q |
62 |
catctcataagcatctagaacaattctgattcaaagtctgttattagtctgtacattcagtgatatttaaaaatttgggtttgtccacatatgtaactcc |
161 |
Q |
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| T |
27786884 |
catcttataagcatctagaaaaattcaggttcaaagtctattattagtttgtacattcagtgatatttaaaaatttgggtttgt-cacatatgtaactcc |
27786982 |
T |
|
| Q |
162 |
tattcatttttgct------tatttatctgaaaagctcacttcaaaatttggaccattaagctcaaaatctattacaaacaattcaaatccaacttcatt |
255 |
Q |
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|||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||| | ||| ||||||||||||| |||||||||| |
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| T |
27786983 |
tattcatttttgcttatatatatatatctgaaaagctcacttcaaaatttgaaccattaagctcaaaatttgttaaaaacaattcaaattcaacttcatt |
27787082 |
T |
|
| Q |
256 |
ctcaagtctcccaaccagaattat |
279 |
Q |
| |
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|||| ||||||||||||||||||| |
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| T |
27787083 |
ctcacgtctcccaaccagaattat |
27787106 |
T |
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