View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0532_low_35 (Length: 282)

Name: NF0532_low_35
Description: NF0532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0532_low_35
NF0532_low_35
[»] chr2 (2 HSPs)
chr2 (87-183)||(14215698-14215798)
chr2 (28-79)||(14215618-14215669)


Alignment Details
Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 87 - 183
Target Start/End: Original strand, 14215698 - 14215798
Alignment:
Q  87 acctaatatattgtgcctgggcttttataaatagatagatatatttgctggaaattctgcccgttgatacttaagca----attggcctcaagcatgaat 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    |||||||||||||||||||    
T  14215698 acctaatatattgtgcctgggcttttataaatagatagatatatttgctggaaattctgcccattgatacttaagcaatatattggcctcaagcatgaat 14215797  T
Q  183 a 183  Q
    |    
T  14215798 a 14215798  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 79
Target Start/End: Original strand, 14215618 - 14215669
Alignment:
Q  28 agagacgtgattttcacaaactgataaatcctttgagatgtctctatccttt 79  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  14215618 agagacgtgattttcacaaactgataaatcctttgagatgtcgctatccttt 14215669  T

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