View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0532_low_38 (Length: 273)
Name: NF0532_low_38
Description: NF0532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0532_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 4 - 197
Target Start/End: Complemental strand, 33356570 - 33356380
Alignment:
| Q |
4 |
cggaaatcaaaggggacattagatccttctggcacaatgatggcatccaccaatggattctctctttgaattgtagcttctgctacctttccttccactc |
103 |
Q |
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| T |
33356570 |
cggaagtcaaaggggacagaagatccttctggcacaatgatggcatccaccaatggattctctctttgaattgtagcttctgctacctttccttccactc |
33356471 |
T |
|
| Q |
104 |
caaccaactctggccatgaactcttacctgagcacacacaatatattgattcacattcaaccatcaaattataattaaaattttcacaaaccat |
197 |
Q |
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| T |
33356470 |
caaccaactctggccatgaactcttacctgaacacacacaatatattgatt--cattcaaccatcaaattatatttaaaa-tttcacaaaccat |
33356380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 24 - 263
Target Start/End: Complemental strand, 33382050 - 33381817
Alignment:
| Q |
24 |
agatccttctggcacaatgatggcatccaccaatggattctctctttgaattgtagcttctgctacctttccttccactccaaccaactctggccatgaa |
123 |
Q |
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|||||||||| ||| |||||||| | |||| ||| |||||| || ||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
33382050 |
agatccttctaacactatgatggctttcaccgatgcattctccctctgaattgtagcttctgctacctttccttcaactccaaccaattctggccatgaa |
33381951 |
T |
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| Q |
124 |
ctcttacctgagcacacacaatatattgattcacattcaaccatcaaattataattaaaattttcacaaaccatttaatttattattcatatatatgcat |
223 |
Q |
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||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
33381950 |
ctcttacctgagcacacacaatatattgatt--cattaaaccatcaaattataattaaaa-tttcacaaaccatttaatttattattcatatataagcat |
33381854 |
T |
|
| Q |
224 |
gtaaacatattaattataaaaccttacctttgcattcatc |
263 |
Q |
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| T |
33381853 |
gtaaacatat---atataactccttacctttgcattcatc |
33381817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 24 - 263
Target Start/End: Complemental strand, 33400310 - 33400082
Alignment:
| Q |
24 |
agatccttctggcacaatgatggcatccaccaatggattctctctttgaattgtagcttctgctacctttccttccactccaaccaactctggccatgaa |
123 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
33400310 |
agatccttctggcacaatgatggcattcaccaatggattctccctctcaattgtagcttctgctacctttccttccactccaaccaattctggccatgag |
33400211 |
T |
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| Q |
124 |
ctcttacctgagcacacacaatatattgattcacattcaaccatcaaattataattaaaattttcacaaaccatttaattta-ttattcatatatatgca |
222 |
Q |
| |
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|||||||||||| ||||| ||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||| ||||| ||||||||||| |
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| T |
33400210 |
ctcttacctgagaacaca----atattgatt--aattcaaccatcaaattataattaaaa-tttcactaaccatttaatttatttatttatatatatgca |
33400118 |
T |
|
| Q |
223 |
tgtaaacatattaattataaaaccttacctttgcattcatc |
263 |
Q |
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| T |
33400117 |
tgtaaacata-----tataacaccttacctttgcattcatc |
33400082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 24 - 205
Target Start/End: Original strand, 39307011 - 39307185
Alignment:
| Q |
24 |
agatccttctggcacaatgatggcatccaccaatggattctctctttgaattgtagcttctgctacctttccttccactccaaccaactctggccatgaa |
123 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39307011 |
agatccttctggcacaatgatggcattcaccaatggattctcactctgaattgtagcttctgctacctttccttccactccaaccaactctggccatgag |
39307110 |
T |
|
| Q |
124 |
ctcttacctgagcacacacaatatattgattcacattcaaccatcaaattataattaaaattttcacaaaccatttaattta |
205 |
Q |
| |
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||||||||||| ||||| ||||||||| |||||||||||||||||||||||| | ||||||||||| ||||||||| |
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| T |
39307111 |
ttcttacctgagaacaca----atattgatt--aattcaaccatcaaattataattaata-tttcacaaaccgtttaattta |
39307185 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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