View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0532_low_41 (Length: 254)
Name: NF0532_low_41
Description: NF0532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0532_low_41 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 26122281 - 26122517
Alignment:
| Q |
1 |
tttcacatagcacacttgtatcaaaagctcgatcgtcacacactttttggtcatgatgcaattgcaatcttactaacaatttgtaaaagggaaataacac |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
26122281 |
tttcacacagcacacttgtatcaaaagctcgatcgtcacacactttttggtcatgatgcaattgcaatcttaccaacaatctgtaaaagggaaataacac |
26122380 |
T |
|
| Q |
101 |
gtgatccttggtgatcgttgtgtaatagtcacattttgaggtttataatccccagttttatcctaaactcaatagcttcatcttcatctatgtttgattc |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
26122381 |
gtga----------tcgttgtgtaatagtcacattttaaggtttataatccccaaatttatcctaaactcaatagctttatcttcatctatgtttgattc |
26122470 |
T |
|
| Q |
201 |
atcattgaaaagaagacaaaagtcattgccgtcctgggtctctgctg |
247 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||| |||||||||| |
|
|
| T |
26122471 |
atcattgaaaagaagacaaaagtcattgcggtgctgagtctctgctg |
26122517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 26131580 - 26131793
Alignment:
| Q |
1 |
tttcacatagcacacttgtatcaaaagctcgatcgtcacacactttttggtcatgatgcaattgcaatcttactaacaatttgtaaaagggaaataacac |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||| ||||||| ||||| ||| || |
|
|
| T |
26131580 |
tttcacatagcacacctgtatcaaaagctcgaccgtcacacactttttggtcataatgcaatttcaatcttactaacaaattgtaaacgggaagtaatac |
26131679 |
T |
|
| Q |
101 |
gtgatccttggtgatcgttgtgtaatagtcacattttgaggtttataatccccagttttatcctaaactcaatagcttcatcttcatctatgtttgattc |
200 |
Q |
| |
|
|| ||||| || | ||||| || |||||||||||||| | ||||||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
26131680 |
gtt--------------ttgtgcaacaaccacatcttaaggtttataatcccaaattttatctcaaattcaatagcttcatcttcatctatgtttgattc |
26131765 |
T |
|
| Q |
201 |
atcattgaaaagaagacaaaagtcattg |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
26131766 |
atcattgaaaagaagacaaaagtcattg |
26131793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 220
Target Start/End: Original strand, 27502653 - 27502682
Alignment:
| Q |
191 |
tgtttgattcatcattgaaaagaagacaaa |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
27502653 |
tgtttgattcatcattgaaaagaagacaaa |
27502682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1186 times since January 2019
Visitors: 3642