View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0532_low_43 (Length: 250)
Name: NF0532_low_43
Description: NF0532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0532_low_43 |
 | |
|
| [»] chr6 (9 HSPs) |
| |
|
| [»] chr1 (3 HSPs) |
| |
|
| [»] scaffold0038 (3 HSPs) |
| |
|
| [»] chr2 (7 HSPs) |
| |
|
| [»] chr3 (9 HSPs) |
| |
|
| [»] scaffold0061 (1 HSPs) |
| |
|
| [»] scaffold0017 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 16273286 - 16273526
Alignment:
| Q |
10 |
aatatggaacaagtgtaaaggtgactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcctaaaattctattggatttgaat |
109 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16273286 |
aatatggaacaagtgtaaaggttactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcctaaaattctattggatttgaat |
16273385 |
T |
|
| Q |
110 |
aattatattttcaataataaatacagcttttagatcaattcaaacatttgattttatcttaaccacattcaaagtcacaaacatgattgattttgatgag |
209 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16273386 |
aattatattttcaataataatcacaacttttagatcaattcaaacatttgattttatcttaaccacattcaaagtcacaaacatgattgattttgatgag |
16273485 |
T |
|
| Q |
210 |
ctgatactataaaatttctacactaacattcaaaataaaca |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16273486 |
ctgatactataaaatttctacactaacattcaaaataaaca |
16273526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 28321495 - 28321255
Alignment:
| Q |
10 |
aatatggaacaagtgtaaaggtgactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcctaaaattctattggatttgaat |
109 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28321495 |
aatatggaacaagtgtaaaggttactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcctaaaattctattggatttgaat |
28321396 |
T |
|
| Q |
110 |
aattatattttcaataataaatacagcttttagatcaattcaaacatttgattttatcttaaccacattcaaagtcacaaacatgattgattttgatgag |
209 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28321395 |
aattatattttcaataataatcacaacttttagatcaattcaaacatttgattttatcttaaccacattcaaagtcacaaacatgattgattttgatgag |
28321296 |
T |
|
| Q |
210 |
ctgatactataaaatttctacactaacattcaaaataaaca |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28321295 |
ctgatactataaaatttctacactaacattcaaaataaaca |
28321255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 22824594 - 22824835
Alignment:
| Q |
10 |
aatatggaacaagtgtaaaggtgactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcctaaaattctattggatttgaat |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22824594 |
aatatggaacaagtgtaaaggtgactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcctaaaattctattggatttgaat |
22824693 |
T |
|
| Q |
110 |
aa-ttatattttcaataataaatacagcttttagatcaattcaaacatttgattttatcttaaccacattcaaagtcacaaacatgattgattttgatga |
208 |
Q |
| |
|
|| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
22824694 |
aaattatattttcaataataatcacaacttttagatcaattcaaacatttgattttatcttaaccacattcaaagtcacaaacatgactgattttgatga |
22824793 |
T |
|
| Q |
209 |
gctgatactataaaatttctacactaacattcaaaataaaca |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22824794 |
gctgatactataaaatttctacactaacattcaaaataaaca |
22824835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 59 - 250
Target Start/End: Original strand, 16274712 - 16274905
Alignment:
| Q |
59 |
cgtataagttaagagtaaaaattgactcctaa-aattctattggatttgaataattatattttcaataataaatacagcttttagatcaattcaaacatt |
157 |
Q |
| |
|
|||||||| ||||||||||||| || ||||| ||||||||||||||||| |||||||||| ||| ||| || ||| |||||||||||||||||||||| |
|
|
| T |
16274712 |
cgtataagctaagagtaaaaatagagtcctattaattctattggatttgattaattatattctcattaacaatcacaacttttagatcaattcaaacatt |
16274811 |
T |
|
| Q |
158 |
tgattttatcttaaccacattcaaagtcacaaacatgattgattttgatgagctgatactataaaa-tttctacactaacattcaaaataaaca |
250 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
16274812 |
tgattttatcttaaccatattcaaagtcacaaacatgattaattatgatgagctgatactataaaactttatacactaacattcaaaataaaca |
16274905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 59 - 248
Target Start/End: Original strand, 22825783 - 22825974
Alignment:
| Q |
59 |
cgtataagttaagagtaaaaattgactcctaa-aattctattggatttgaataattatattttcaataataaatacagcttttagatcaattcaaacatt |
157 |
Q |
| |
|
|||||||| ||||||||||||| || ||||| ||||||||||||||||| |||||||||| ||| ||| || ||| |||| ||||||||||||||||| |
|
|
| T |
22825783 |
cgtataagctaagagtaaaaatagagtcctattaattctattggatttgattaattatattctcattaacaatcacaactttaagatcaattcaaacatt |
22825882 |
T |
|
| Q |
158 |
tgattttatcttaaccacattcaaagtcacaaacatgattgattttgatgagctgatactataaaa-tttctacactaacattcaaaataaa |
248 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
22825883 |
tgattttatcttaaccatattcaaagtcacaaacatgattaattatgatgagctgatactataaaactttctacactaacattcaaaataaa |
22825974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 59 - 250
Target Start/End: Complemental strand, 28320076 - 28319882
Alignment:
| Q |
59 |
cgtataagttaagagtaaaaatt-gactcctaa-aattctattggatttgaataattatattttcaataataaatacagcttttagatcaattcaaacat |
156 |
Q |
| |
|
|||||||| |||||||||||| | || ||||| ||||||||||||||||| |||||||||| ||| ||| || ||| ||||||||||||||||||||| |
|
|
| T |
28320076 |
cgtataagctaagagtaaaaaatagagtcctattaattctattggatttgattaattatattctcattaacaatcacaacttttagatcaattcaaacat |
28319977 |
T |
|
| Q |
157 |
ttgattttatcttaaccacattcaaagtcacaaacatgattgattttgatgagctgatactataaaa-tttctacactaacattcaaaataaaca |
250 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||| ||| |||||||||||||| |
|
|
| T |
28319976 |
ttgattttatcttaaccatattcaaagtcacaaacatgattaattgtgatgagctgatactataaaactttctacattaatattcaaaataaaca |
28319882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 16274501 - 16274545
Alignment:
| Q |
10 |
aatatggaacaagtgtaaaggtgactcttattatttttagcaaac |
54 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
16274501 |
aatatggaacaagtgtaaagttgactcttattatttttagcaaac |
16274545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 28320286 - 28320242
Alignment:
| Q |
10 |
aatatggaacaagtgtaaaggtgactcttattatttttagcaaac |
54 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
28320286 |
aatatggaacaagtgtaaagttgactcttattatatttagcaaac |
28320242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 22825572 - 22825616
Alignment:
| Q |
10 |
aatatggaacaagtgtaaaggtgactcttattatttttagcaaac |
54 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
22825572 |
aatatgaaacaagtgtaaagttgactcttattatttttatcaaac |
22825616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 29995947 - 29996187
Alignment:
| Q |
10 |
aatatggaacaagtgtaaaggtgactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcctaaaattctattggatttgaat |
109 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29995947 |
aatatggaacaagtgtaaaggttactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcctaaaattctattggatttgaat |
29996046 |
T |
|
| Q |
110 |
aattatattttcaataataaatacagcttttagatcaattcaaacatttgattttatcttaaccacattcaaagtcacaaacatgattgattttgatgag |
209 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29996047 |
aattatattttcaataataatcacaacttttagatcaattcaaacatttgattttatcttaaccacattcaaagtcacaaacatgattgattttgatgag |
29996146 |
T |
|
| Q |
210 |
ctgatactataaaatttctacactaacattcaaaataaaca |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29996147 |
ctgatactataaaatttctacactaacattcaaaataaaca |
29996187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 59 - 250
Target Start/End: Original strand, 29997373 - 29997566
Alignment:
| Q |
59 |
cgtataagttaagagtaaaaattgactcctaa-aattctattggatttgaataattatattttcaataataaatacagcttttagatcaattcaaacatt |
157 |
Q |
| |
|
|||||||| ||||||||||||| || ||||| ||||||||||||||||| |||||||||| ||| ||| || ||| |||||||||||||||||||||| |
|
|
| T |
29997373 |
cgtataagctaagagtaaaaatagagtcctattaattctattggatttgattaattatattctcattaacaatcacaacttttagatcaattcaaacatt |
29997472 |
T |
|
| Q |
158 |
tgattttatcttaaccacattcaaagtcacaaacatgattgattttgatgagctgatactataaaa-tttctacactaacattcaaaataaaca |
250 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
29997473 |
tgattttatcttaaccatattcaaagtcacaaacatgattaattatgatgagctgatactataaaactttatacactaacattcaaaataaaca |
29997566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 29997162 - 29997206
Alignment:
| Q |
10 |
aatatggaacaagtgtaaaggtgactcttattatttttagcaaac |
54 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
29997162 |
aatatggaacaagtgtaaagttgactcttattatttttagcaaac |
29997206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 112604 - 112364
Alignment:
| Q |
10 |
aatatggaacaagtgtaaaggtgactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcctaaaattctattggatttgaat |
109 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
112604 |
aatatggaacaagtgtaaaagttactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcctaaaattctattggatttgaat |
112505 |
T |
|
| Q |
110 |
aattatattttcaataataaatacagcttttagatcaattcaaacatttgattttatcttaaccacattcaaagtcacaaacatgattgattttgatgag |
209 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
112504 |
aattatattttcaataataatcacaacttttagatcaattcaaacatttgattttatcttaaccacattcaaagtcacaaacatgattgattttgatgag |
112405 |
T |
|
| Q |
210 |
ctgatactataaaatttctacactaacattcaaaataaaca |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
112404 |
ctgatactataaaatttctacactaacattcaaaataaaca |
112364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 59 - 250
Target Start/End: Complemental strand, 111182 - 110988
Alignment:
| Q |
59 |
cgtataagttaagagtaaaaatt-gactcctaa-aattctattggatttgaataattatattttcaataataaatacagcttttagatcaattcaaacat |
156 |
Q |
| |
|
|||||||| |||||||||||| | || ||||| ||||||||||||||||| |||||||||| ||| ||| || ||| |||| |||||||||||||||| |
|
|
| T |
111182 |
cgtataagctaagagtaaaaaatagagtcctattaattctattggatttgattaattatattctcattaacaatcacaactttaagatcaattcaaacat |
111083 |
T |
|
| Q |
157 |
ttgattttatcttaaccacattcaaagtcacaaacatgattgattttgatgagctgatactataaaa-tttctacactaacattcaaaataaaca |
250 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||| ||| |||||||||||||| |
|
|
| T |
111082 |
ttgattttatcttaaccatattcaaagtcacaaacatgattaattgtgatgagctgatactataaaactttctacattaatattcaaaataaaca |
110988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 111392 - 111348
Alignment:
| Q |
10 |
aatatggaacaagtgtaaaggtgactcttattatttttagcaaac |
54 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
111392 |
aatatggaacaagtgtaaagttgactcttattatatttagcaaac |
111348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 19047106 - 19046866
Alignment:
| Q |
10 |
aatatggaacaagtgtaaaggtgactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcctaaaattctattggatttgaat |
109 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19047106 |
aatatggaacaagtgtaaaagttactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcctaaaattctattggatttgaat |
19047007 |
T |
|
| Q |
110 |
aattatattttcaataataaatacagcttttagatcaattcaaacatttgattttatcttaaccacattcaaagtcacaaacatgattgattttgatgag |
209 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19047006 |
aattatattttcaataataatcacaacttttagatcaattcaaacatttgattttatcttaaccacattcaaagtcacaaacatgattgattttgatgag |
19046907 |
T |
|
| Q |
210 |
ctgatactataaaatttctacactaacattcaaaataaaca |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19046906 |
ctgatactataaaatttctacactaacattcaaaataaaca |
19046866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 10 - 244
Target Start/End: Original strand, 39833007 - 39833241
Alignment:
| Q |
10 |
aatatggaacaagtgtaaaggtgactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcctaaaattctattggatttgaat |
109 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39833007 |
aatatggaacaagtgtaaaggttactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcctaaaattctattggatttgaat |
39833106 |
T |
|
| Q |
110 |
aattatattttcaataataaatacagcttttagatcaattcaaacatttgattttatcttaaccacattcaaagtcacaaacatgattgattttgatgag |
209 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39833107 |
aattatattttcaataataatcacaacttttagatcaattcaaacatttgattttatcttaaccacattcaaagtcacaaacatgattgattttgatgag |
39833206 |
T |
|
| Q |
210 |
ctgatactataaaatttctacactaacattcaaaa |
244 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
39833207 |
ctgatactataaaatttctacactaacattcaaaa |
39833241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 26240064 - 26239824
Alignment:
| Q |
10 |
aatatggaacaagtgtaaaggtgactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcctaaaattctattggatttgaat |
109 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26240064 |
aatatggaataagtgtaaaggtgactcttattatttttagcaaacatgtcgtataagttaaaagtaaaaattgactcctaaaattctattggatttgaat |
26239965 |
T |
|
| Q |
110 |
aattatattttcaataataaatacagcttttagatcaattcaaacatttgattttatcttaaccacattcaaagtcacaaacatgattgattttgatgag |
209 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26239964 |
aattatattttcaataataatcacaacttttagatcaattcaaacatttgatttaatattaaccacattcaaagtcacaaacatgattgattttgatgag |
26239865 |
T |
|
| Q |
210 |
ctgatactataaaatttctacactaacattcaaaataaaca |
250 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
26239864 |
ctgatcctataaaatttctacactaacattcaaaataaaca |
26239824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 59 - 250
Target Start/End: Complemental strand, 19045683 - 19045490
Alignment:
| Q |
59 |
cgtataagttaagagtaaaaattgactccta-aaattctattggatttgaataattatattttcaataataaatacagcttttagatcaattcaaacatt |
157 |
Q |
| |
|
|||||||| ||||||||||||| || ||||| |||||||||||||||||| |||||||||| ||| ||| || ||| |||||||||||||||||||||| |
|
|
| T |
19045683 |
cgtataagctaagagtaaaaatagagtcctataaattctattggatttgattaattatattctcattaacaatcacaacttttagatcaattcaaacatt |
19045584 |
T |
|
| Q |
158 |
tgattttatcttaaccacattcaaagtcacaaacatgattgattttgatgagctgatactataaaa-tttctacactaacattcaaaataaaca |
250 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
19045583 |
tgattttatcttaaccatattcaaagtcacaaacatgattaattatgatgagctgatactataaaactttctacactaacattcaaaataaaca |
19045490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 60 - 250
Target Start/End: Original strand, 39834721 - 39834913
Alignment:
| Q |
60 |
gtataagttaagagtaaaaattgactccta-aaattctattggatttgaataattatattttcaataataaatacagcttttagatcaattcaaacattt |
158 |
Q |
| |
|
||||||| ||||||||||||| | ||||| |||||||||||||||||| |||||||||| ||| ||| || ||| ||||||||||||||||||||||| |
|
|
| T |
39834721 |
gtataagctaagagtaaaaatatagtcctataaattctattggatttgattaattatattctcattaacaatcacaacttttagatcaattcaaacattt |
39834820 |
T |
|
| Q |
159 |
gattttatcttaaccacattcaaagtcacaaacatgattgattttgatgagctgatactataaaa-tttctacactaacattcaaaataaaca |
250 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
39834821 |
gattttatcttaaccatattcaaagtcacaaacatgattaattatgatgagctgatactataaaactttctacaccaacattcaaaataaaca |
39834913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 19045894 - 19045850
Alignment:
| Q |
10 |
aatatggaacaagtgtaaaggtgactcttattatttttagcaaac |
54 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
19045894 |
aatatggaacaagtgtaaagttgactcttattatttttagcaaac |
19045850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 39834509 - 39834553
Alignment:
| Q |
10 |
aatatggaacaagtgtaaaggtgactcttattatttttagcaaac |
54 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
39834509 |
aatatggaacaagtgtaaagttgactcttattatttttagcaaac |
39834553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 32968018 - 32968258
Alignment:
| Q |
10 |
aatatggaacaagtgtaaaggtgactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcctaaaattctattggatttgaat |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
32968018 |
aatatggaacaagtgtaaaggtgactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcctaaaattctattagatttgaat |
32968117 |
T |
|
| Q |
110 |
aattatattttcaataataaatacagcttttagatcaattcaaacatttgattttatcttaaccacattcaaagtcacaaacatgattgattttgatgag |
209 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32968118 |
aattatattttcaataataatcacaacttttagatcaattcaaacatttgattttatctcaaccacattcaaagtcacaaacatgattgattttgatgag |
32968217 |
T |
|
| Q |
210 |
ctgatactataaaatttctacactaacattcaaaataaaca |
250 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
32968218 |
ctgatacaataaaatttctacactaacattcaaaataaaca |
32968258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 10024542 - 10024302
Alignment:
| Q |
10 |
aatatggaacaagtgtaaaggtgactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcctaaaattctattggatttgaat |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10024542 |
aatatggaacaagtgtaaaggtgactcttactatttttaacaaacatgtcgtataagttaagagtaaaaattgactcctaaaattctattggatttgaat |
10024443 |
T |
|
| Q |
110 |
aattatattttcaataataaatacagcttttagatcaattcaaacatttgattttatcttaaccacattcaaagtcacaaacatgattgattttgatgag |
209 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10024442 |
aattatattttcaataataatcacaacttttagatcaattcaaacatttgatttcatcttaaccacattcaaagtcacaaacatgattgattttgatgag |
10024343 |
T |
|
| Q |
210 |
ctgatactataaaatttctacactaacattcaaaataaaca |
250 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
10024342 |
ctgatactataaaatttctacattaacattcaaaataaaca |
10024302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 42394570 - 42394810
Alignment:
| Q |
10 |
aatatggaacaagtgtaaaggtgactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcctaaaattctattggatttgaat |
109 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42394570 |
aatatggaacaagtgtaaaagttactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcctaaaattctattggatttgaat |
42394669 |
T |
|
| Q |
110 |
aattatattttcaataataaatacagcttttagatcaattcaaacatttgattttatcttaaccacattcaaagtcacaaacatgattgattttgatgag |
209 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
42394670 |
aattatattttcaataataatcacaacttttagatcaattcaaacatttgattttatcttaatcacattcaaagtcacaaagatgattgattttgatgag |
42394769 |
T |
|
| Q |
210 |
ctgatactataaaatttctacactaacattcaaaataaaca |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42394770 |
ctgatactataaaatttctacactaacattcaaaataaaca |
42394810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 59 - 250
Target Start/End: Original strand, 42396012 - 42396205
Alignment:
| Q |
59 |
cgtataagttaagagtaaaaattgactcctaa-aattctattggatttgaataattatattttcaataataaatacagcttttagatcaattcaaacatt |
157 |
Q |
| |
|
|||||||| ||||||||||||| || ||||| ||||||||||||||||| |||||||||| ||| ||| || ||| |||||||||||||||||||||| |
|
|
| T |
42396012 |
cgtataagctaagagtaaaaatagagtcctattaattctattggatttgattaattatattctcattaacaatcacaacttttagatcaattcaaacatt |
42396111 |
T |
|
| Q |
158 |
tgattttatcttaaccacattcaaagtcacaaacatgattgattttgatgagctgatactataaaa-tttctacactaacattcaaaataaaca |
250 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
42396112 |
tgattttatcttaaccatattcaaagtcacaaacatgattaattatgatgagctgatactataaaactttatacactaacattcaaaataaaca |
42396205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 91 - 250
Target Start/End: Original strand, 32969797 - 32969957
Alignment:
| Q |
91 |
aattctattggatttgaataattatattttcaataataaatacagcttttagatcaattcaaacatttgattttatcttaaccacattcaaagtcacaaa |
190 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| ||| || ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
32969797 |
aattctattggatttgattaattatattctcattaacaatcacaacttttagatcaattcaaacatttgattttatcttaaccatattcaaagtcacaaa |
32969896 |
T |
|
| Q |
191 |
catgattgattttgatgagctgatactataaaa-tttctacactaacattcaaaataaaca |
250 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
32969897 |
catgattaattatgatgagctgatactataaaactttctacactaacattcaaaataaaca |
32969957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 51 - 250
Target Start/End: Complemental strand, 10023299 - 10023098
Alignment:
| Q |
51 |
aaacatgtcgtataagttaagagtaaaaattgactcctaa-aattctattggatttgaataattatattttcaataataaatacagcttttagatcaatt |
149 |
Q |
| |
|
||||||| |||||||| ||||||||||||| || ||||| ||||||||||||||||| |||||||||| ||| ||| || ||| |||||||||||||| |
|
|
| T |
10023299 |
aaacatgacgtataagctaagagtaaaaatagagtcctattaattctattggatttgattaattatattctcattaacaatcacaacttttagatcaatt |
10023200 |
T |
|
| Q |
150 |
caaacatttgattttatcttaaccacattcaaagtcacaaacatgattgattttgatgagctgatactataaaa-tttctacactaacattcaaaataaa |
248 |
Q |
| |
|
||| ||||||||||||||||||||| | |||||||||||||||| ||| ||| ||||||||||||||||||||| |||||| |||||||| |||||||| |
|
|
| T |
10023199 |
caagcatttgattttatcttaaccatagtcaaagtcacaaacataattaattgtgatgagctgatactataaaaccttctactctaacattaaaaataaa |
10023100 |
T |
|
| Q |
249 |
ca |
250 |
Q |
| |
|
|| |
|
|
| T |
10023099 |
ca |
10023098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 42395801 - 42395845
Alignment:
| Q |
10 |
aatatggaacaagtgtaaaggtgactcttattatttttagcaaac |
54 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
42395801 |
aatatggaacaagtgtaaagttgactcttattatttttagcaaac |
42395845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 10023502 - 10023458
Alignment:
| Q |
10 |
aatatggaacaagtgtaaaggtgactcttattatttttagcaaac |
54 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
10023502 |
aatatagaacaagtgtaaagttgactcttattatttttagcaaac |
10023458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 32969547 - 32969591
Alignment:
| Q |
10 |
aatatggaacaagtgtaaaggtgactcttattatttttagcaaac |
54 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||| |||||| |
|
|
| T |
32969547 |
aatatggaagaagtgtaaagttgactcttattattttttgcaaac |
32969591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 41055 - 40815
Alignment:
| Q |
10 |
aatatggaacaagtgtaaaggtgactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcctaaaattctattggatttgaat |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
41055 |
aatatggaacaagtgtaaaggtgactcttattatttt-agcaaacatgtcgtataagttaagagtcaaaatcgactcctaaaattctattggatttgaat |
40957 |
T |
|
| Q |
110 |
aattatattttcaa-taataaatacagcttttagatcaattcaaacatttgattttatcttaaccacattcaaagtcacaaacatgattgattttgatga |
208 |
Q |
| |
|
|||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
40956 |
aattatattttcaaataataatcacaacttttagatcaattcaaacatttgattttatcttaaccacattcaaagtcacaaacatgattcattttgatga |
40857 |
T |
|
| Q |
209 |
gctgatactataaaatttctacactaacattcaaaataaaca |
250 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40856 |
gttgatactataaaatttctacactaacattcaaaataaaca |
40815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 157730 - 157970
Alignment:
| Q |
10 |
aatatggaacaagtgtaaaggtgactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcctaaaattctattggatttgaat |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
157730 |
aatatggaacaagtgtaaaggtgactcttattatttt-agcaaacatgtcgtataagttaagagtcaaaatcgactcctaaaattctattggatttgaat |
157828 |
T |
|
| Q |
110 |
aattatattttcaa-taataaatacagcttttagatcaattcaaacatttgattttatcttaaccacattcaaagtcacaaacatgattgattttgatga |
208 |
Q |
| |
|
|||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
157829 |
aattatattttcaaataataatcacaacttttagatcaattcaaacatttgattttatcttaaccacattcaaagtcacaaacatgattcattttgatga |
157928 |
T |
|
| Q |
209 |
gctgatactataaaatttctacactaacattcaaaataaaca |
250 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
157929 |
gttgatactataaaatttctacactaacattcaaaataaaca |
157970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 31973191 - 31973384
Alignment:
| Q |
10 |
aatatggaacaagtgtaaaggtgactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcctaaaattctattggatttgaat |
109 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31973191 |
aatatggaacaagtgtaaaggtgactctaattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcctaaaattctattggatttgaat |
31973290 |
T |
|
| Q |
110 |
aattatattttcaataataaatacagcttttagatcaattcaaacatttgattttatcttaaccacattcaaagtcacaaacatgattgatttt |
203 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31973291 |
aattatattttcaataataatcacaacttttagatcaattcaaacatttgattttatcttaaccacattcaaagtcacaaacatgattgatttt |
31973384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 193
Target Start/End: Original strand, 7968153 - 7968211
Alignment:
| Q |
136 |
cttttagatcaattcaaacatttga-ttttatcttaaccacattcaaagtcacaaacat |
193 |
Q |
| |
|
||||||||||||| || ||||||| |||||||||||||||||| ||||||||| |||| |
|
|
| T |
7968153 |
cttttagatcaatagaagcatttgacttttatcttaaccacatttaaagtcacacacat |
7968211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 250 times since January 2019
Visitors: 3648