View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0532_low_7 (Length: 577)
Name: NF0532_low_7
Description: NF0532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0532_low_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 422; Significance: 0; HSPs: 20)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 30 - 567
Target Start/End: Complemental strand, 22435740 - 22435203
Alignment:
| Q |
30 |
ttaagatctacaaagtttgagaatcgtaatatgccgaaggagatttgcaagcttagaaagctacgtcattttttagtcgattgtctgtctttgattcaac |
129 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
22435740 |
ttaagatctacagagtttgaaaatcgtaatatgccaaaggaggtttgcaagcttagaaagctacgtcattttttaggcgattctctgtctttgattcatt |
22435641 |
T |
|
| Q |
130 |
tgaaggatggtattggaggcatgacatccctacaaactctaagtagagtacgcttagatgatggtgaagatgaaaatgataatagggtagtagagctaat |
229 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22435640 |
tgaaggatggtattggaggcatgacatcgctacaaactctaagtaaagttaaattagatgatggtgaagatgaaaatgataatagggtagtagagctaat |
22435541 |
T |
|
| Q |
230 |
catagagctaggaaagttaacacaacttagggaattgggcttggttgttgttagtagtaaatatatgagtgctatatcttcctcaatcaataagatgcaa |
329 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22435540 |
catagagctaggaaagctaacacagcttagggaattgggcttggttgttgttagtggtaaatatatgagtgctatatcttcctcaatcaataagatgcat |
22435441 |
T |
|
| Q |
330 |
caactagagaaattaaatatttttggaatcaaattagacattttcattgatctggatttgaattcacccccacctaggcttgaacgtgttaaactctttg |
429 |
Q |
| |
|
||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22435440 |
gaactagagagactgcatatttttggaatcaaattagacattttcattgatctggatttgaattcacccccacctaggcttgaacgtgttaaactctttg |
22435341 |
T |
|
| Q |
430 |
gatatttaaataagtttcctgagtggatctcaaaactccaaaatcttgttaagctggatttgccacgtttgaaggaagtgaatgatgcaatgaaattact |
529 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22435340 |
gatattcaaataagtttcctgagtggatttcaaaactccaaaatcttgttaagctggatttgccacgtttgaaggaagtgaatgatgcaatgaaattact |
22435241 |
T |
|
| Q |
530 |
ccaacttatgccaaacttgctgtccctccatatctctg |
567 |
Q |
| |
|
||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
22435240 |
tcaaagtatgccaaacttgttgtccctccatatctctg |
22435203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 51 - 557
Target Start/End: Complemental strand, 22629531 - 22629025
Alignment:
| Q |
51 |
aatcgtaatatgccgaaggagatttgcaagcttagaaagctacgtcattttttagtcgattgtctgtctttgattcaactgaaggatggtattggaggca |
150 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||||||||| |||||||||| | | || ||||||||||| | |||||||| |||||||||||| |
|
|
| T |
22629531 |
aatcgtaatatgccaaaggagatttgcatgcttagaaagctacgccattttttaggcattcgtatgtctttgattgagttgaaggatagtattggaggca |
22629432 |
T |
|
| Q |
151 |
tgacatccctacaaactctaagtagagtacgcttagatgatggtgaagatgaaaatgataatagggtagtagagctaatcatagagctaggaaagttaac |
250 |
Q |
| |
|
||||||||||||||||||||| ||| || | ||||||||| |||||||||||||||||||| || |||||||||||| ||| ||||||||| ||| |
|
|
| T |
22629431 |
tgacatccctacaaactctaaatagtgtttgtttagatgataaggaagatgaaaatgataatagagtggtagagctaatcgaagatctaggaaagctaaa |
22629332 |
T |
|
| Q |
251 |
acaacttagggaattgggcttggttgttgttagtagtaaatatatgagtgctatatcttcctcaatcaataagatgcaacaactagagaaattaaatatt |
350 |
Q |
| |
|
|| || |||||||||| |||| | | |||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||| || | ||| |
|
|
| T |
22629331 |
tcagctaagggaattggtcttgctcggtgttaggagtaaatatatgagtgctatatcttcctcaatcaataagatgcaacaattggagaaactacaaatt |
22629232 |
T |
|
| Q |
351 |
tttggaatcaaattagacattttcattgatctggatttgaattcacccccacctaggcttgaacgtgttaaactctttggatatttaaataagtttcctg |
450 |
Q |
| |
|
|||| || ||| |||| |||||||||||||||| ||| |||||||||||||||||| ||||||||||||||| ||||||||| || || || |||| |
|
|
| T |
22629231 |
agtggagtccaatatgacacattcattgatctggattagaagtcacccccacctaggcttcaacgtgttaaactctatggatattttaagaaattacctg |
22629132 |
T |
|
| Q |
451 |
agtggatctcaaaactccaaaatcttgttaagctggatttgccacgtttgaaggaagtgaatgatgcaatgaaattactccaacttatgccaaacttgct |
550 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||| || | | |||| ||| ||||||||||||||||||||||||| ||||| ||| ||||| |
|
|
| T |
22629131 |
agtggatttcaaaactccagaatcttgttaagctgagagtgatgcttacgaagcaagggaatgatgcaatgaaattactccaaagtatgcgaaaattgct |
22629032 |
T |
|
| Q |
551 |
gtccctc |
557 |
Q |
| |
|
||||||| |
|
|
| T |
22629031 |
gtccctc |
22629025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 51 - 567
Target Start/End: Complemental strand, 22367012 - 22366493
Alignment:
| Q |
51 |
aatcgtaatatgccgaaggagatttgcaagcttagaaagctacgtcattttttagtcgattgtctgtctttgattcaactgaaggatggtattggaggca |
150 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| | || || ||||||||||| | ||||||||||||||||||||| |
|
|
| T |
22367012 |
aatcgtaatatgccgaaggagatttgcaagcttagaaagctacgccattttttaggctatcgtatgtctttgattgagttgaaggatggtattggaggca |
22366913 |
T |
|
| Q |
151 |
tgacatccctacaaactctaagtagagtacgcttagatgatggtgaagatgaaaatgataatagggtagtagagctaatcatagagctaggaaagttaac |
250 |
Q |
| |
|
||||||||||||||||||||| | || ||| ||||| ||||||||||||||||||||| || ||||||||||| |||||||||||| ||| |
|
|
| T |
22366912 |
tgacatccctacaaactctaaatgaggtttatttatatgatcatgaagatgaaaatgataatagagtcgtagagctaattgaagagctaggaaaactaaa |
22366813 |
T |
|
| Q |
251 |
acaacttagggaattgggcttggttgttgttagtagtaaatatatgagtgctatatcttcctcaatcaataagatgcaacaactagagaaattaaatatt |
350 |
Q |
| |
|
|| || |||||||||||||||| | |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
22366812 |
gcagctaagggaattgggcttggccggtgttaggagtaaatatatgagtgctatatcttcttcaatcaataagatgcaacaactggagaaactaaatatt |
22366713 |
T |
|
| Q |
351 |
tttggaatcaaattagacattttcattgatctggatttgaattcacccccacctaggcttgaacgtgttaaactctttggatatttaaataagtttcctg |
450 |
Q |
| |
|
|||| || ||| || | |||||||||||||||||||||||||||||||||| |||| ||| | || ||||| || ||||||| |||||||||| |
|
|
| T |
22366712 |
agtggagtcgaatatgagacattcattgatctggatttgaattcacccccacctatgcttcaacatattggactctacgggaatttaaagaagtttcctg |
22366613 |
T |
|
| Q |
451 |
agtggatctcaaaactccaaaatcttgttaagctggatttgccacgtttga---aggaagtgaatgatgcaatgaaattactccaacttatgccaaactt |
547 |
Q |
| |
|
||||||| |||||||| ||| |||||| | || | || || | || |||||| ||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
22366612 |
agtggattccaaaactcacaaaccttgttgacatgaaggtgagacttacgaaggaggaagggaacgatgcaatgaaattactccaaagtatgccaaactt |
22366513 |
T |
|
| Q |
548 |
gctgtccctccatatctctg |
567 |
Q |
| |
|
| |||||||||||||||||| |
|
|
| T |
22366512 |
gttgtccctccatatctctg |
22366493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 56 - 565
Target Start/End: Complemental strand, 22441828 - 22441316
Alignment:
| Q |
56 |
taatatgccgaaggagatttgcaagcttagaaagctacgtcattttttagtcgattgtctgtctttgattcaactgaaggatggtattggaggcatgaca |
155 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||| | || || ||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
22441828 |
taatatgccgaaggagatttgcaagcttagaaagctacgccattttttaggctatcgtatgtctttgattgagttgaaggatggtattggaggcatgaca |
22441729 |
T |
|
| Q |
156 |
tccctacaaactctaagtagagtacgcttagatgatggtgaagatgaaaatgataatagggtagtagagctaatcatagagctaggaaagttaacacaac |
255 |
Q |
| |
|
|||||||||||||||||| |||||| |||| ||||| ||||| ||||||||||||||| || |||||||||||| ||||||||||||| ||| ||| | |
|
|
| T |
22441728 |
tccctacaaactctaagtggagtacacttaaatgatagtgaacgtgaaaatgataatagagttgtagagctaatccaagagctaggaaagctaaaacagc |
22441629 |
T |
|
| Q |
256 |
ttagggaattgggcttggttgttgttagtagtaaatatatgagtgctatatcttcctcaatcaataagatgcaacaactagagaaattaaatatttttgg |
355 |
Q |
| |
|
| ||| ||||||||||| | |||||| ||||||||||||||||||||||||| ||||||||| ||||||||||| | |||||| ||| |||| ||| |
|
|
| T |
22441628 |
taaggaaattgggcttgaccggtgttaggagtaaatatatgagtgctatatctttctcaatcaacgagatgcaacaattggagaaactaattattagtgg |
22441529 |
T |
|
| Q |
356 |
aatcaaat-ta--gacattttcattgatctggatttgaattcacccccacctaggcttgaacgtgttaaactctttggatatttaaataagtttcctgag |
452 |
Q |
| |
|
| || ||| || ||| |||||||||||||||||||||||||||||||||| |||| ||| ||||||| || || ||||| |||||||||||||| |
|
|
| T |
22441528 |
agtccaatctactaacacattcattgatctggatttgaattcacccccacctaagcttcaacatgttaaattcgacgggaatttatataagtttcctgag |
22441429 |
T |
|
| Q |
453 |
tggatctcaaaactccaaaatcttgttaagctggatttgccacgtttgaaggaagtgaatgatgcaatgaaattactccaacttatgccaaacttgctgt |
552 |
Q |
| |
|
||||| ||||||| ||| ||||||||||| || ||| | |||| || ||||||||||||||||||||| | ||||||||||||| ||| |
|
|
| T |
22441428 |
tggattcaaaaactcagaaaccttgttaagcttagagtgacacttacgaagcaacaaaatgatgcaatgaaattactcataagtatgccaaacttgttgt |
22441329 |
T |
|
| Q |
553 |
ccctccatatctc |
565 |
Q |
| |
|
||||||||||||| |
|
|
| T |
22441328 |
ccctccatatctc |
22441316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 55 - 556
Target Start/End: Complemental strand, 22634542 - 22634041
Alignment:
| Q |
55 |
gtaatatgccgaaggagatttgcaagcttagaaagctacgtcattttttagtcgattgtctgtctttgattcaactgaaggatggtattggaggcatgac |
154 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||||| |||||| ||| | || ||||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
22634542 |
gtaatatgcccaaggagatttgcaagcttaaaaagctacgccattttataggctatcaaatgtctctgattcagttgaaggatggtattggaggcatgac |
22634443 |
T |
|
| Q |
155 |
atccctacaaactctaagtagagtacgcttagatgatggtgaagatgaaaatgataatagggtagtagagctaatcatagagctaggaaagttaacacaa |
254 |
Q |
| |
|
||||||||||||||||| | || ||||| |||| |||||||||| |||||||||| || |||||| |||| ||||||||||||| ||| || |
|
|
| T |
22634442 |
atccctacaaactctaaatgaggtttatttagacgatgatgaagatgaagatgataatagagtggtagagttaatagaagagctaggaaagctaaagcag |
22634343 |
T |
|
| Q |
255 |
cttagggaattgggcttggttgttgttagtagtaaatatatgagtgctatatcttcctcaatcaataagatgcaacaactagagaaattaaatatttttg |
354 |
Q |
| |
|
||||||||||| ||||||| | |||||| ||||||||||||||||||||||||||||||||||| |||||||||||| | |||||| |||||||| | |
|
|
| T |
22634342 |
cttagggaattaagcttggtcggtgttaggagtaaatatatgagtgctatatcttcctcaatcaacaagatgcaacaattggagaaactaaatattagag |
22634243 |
T |
|
| Q |
355 |
gaatcaaattagacattttcattgatctggatttgaattcacccccacctaggcttgaacgtgttaaactctttggatatttaaataagtttcctgagtg |
454 |
Q |
| |
|
|||||| || ||| ||||||||| |||||||||||||||||||||| | |||| ||||||||||||| | || |||||| || || |||||||| |
|
|
| T |
22634242 |
gaatcagatataacacattcattgatatggatttgaattcacccccaccaaagcttcaacgtgttaaacttatagggtatttattgaaattgcctgagtg |
22634143 |
T |
|
| Q |
455 |
gatctcaaaactccaaaatcttgttaagctggatttgccacgtttgaaggaagtgaatgatgcaatgaaattactccaacttatgccaaacttgctgtcc |
554 |
Q |
| |
|
||| |||||||||||| |||| |||||| || | || | | |||||||| |||||||||||||||||||||| || ||||||||||||| ||||| |
|
|
| T |
22634142 |
gatttcaaaactccaatatctcgttaagttgaaggtgacgattacgaaggaagggaatgatgcaatgaaattactcaaaagtatgccaaacttgttgtcc |
22634043 |
T |
|
| Q |
555 |
ct |
556 |
Q |
| |
|
|| |
|
|
| T |
22634042 |
ct |
22634041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 53 - 548
Target Start/End: Complemental strand, 22467034 - 22466548
Alignment:
| Q |
53 |
tcgtaatatgccgaaggagatttgcaagcttagaaagctacgtcattttttagtcgattgtctgtctttgattcaactgaaggatggtattggaggcatg |
152 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||||||| ||||| |||| ||||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
22467034 |
tcgtgatatgccaaaggagatttgcaagcttagaaagctacgccatttattaggcgattgtatgtctttgattcagttgaaggatggtattggaggcatg |
22466935 |
T |
|
| Q |
153 |
acatccctacaaactctaagtagagtacgcttagatgatggtgaagatgaaaatgataatagggtagtagagctaatcatagagctaggaaagttaacac |
252 |
Q |
| |
|
||||| ||||||||||||||| ||| |||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||| ||| |
|
|
| T |
22466934 |
acatctctacaaactctaagtgaagtttatttagatgagaatgaagatgaaaatgataatagagtagtagagctaattcaagagctaggaaagctaaata |
22466835 |
T |
|
| Q |
253 |
aacttagggaattgggcttggttgttgttagtagtaaatatatgagtgctatatcttcctcaatcaataagatgcaacaactagagaaattaaatatttt |
352 |
Q |
| |
|
| | || ||||| ||||| | | |||||| |||||||||||||||||||||||||||||||||||| | ||||||||| | |||||| || ||| |
|
|
| T |
22466834 |
agataagaaaattgagcttgataggtgttaggagtaaatatatgagtgctatatcttcctcaatcaatcaaatgcaacaaatggagaaactacttatcgg |
22466735 |
T |
|
| Q |
353 |
tggaatcaaattagacattttcattgatctggatttgaattcacccccacctaggcttgaacgtgttaaactctttggatatttaaataagtttcctgag |
452 |
Q |
| |
|
|||||| | ||||||| ||||||||||||||||||||||||||||||| ||||||||||||| | |||||| ||||| |||||| |
|
|
| T |
22466734 |
aggaatctca---------ttcattggtctggatttgaattcacccccacctaggcttcaacgtgttaaacttgactggcatttaagaaagttacctgag |
22466644 |
T |
|
| Q |
453 |
tggatctcaaaactccaaaatcttgttaagctggatttgccacgtttgaaggaagtgaatgatgcaatgaaattactccaacttatgccaaacttg |
548 |
Q |
| |
|
||||| ||||||||| ||||||||||| |||| | || || | |||||||| ||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
22466643 |
tggatttcaaaactcaaaaatcttgttgagctcaaggtgacagttaggaaggaagggaatgatgcaatgaaattactccaaagtatgccaaacttg |
22466548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 30 - 557
Target Start/End: Complemental strand, 22357099 - 22356557
Alignment:
| Q |
30 |
ttaagatctacaaagtttgagaatcgtaatatgccgaaggagatttgcaagcttagaaagctacgtcattttttagtcgattgtctgtctttgattcaac |
129 |
Q |
| |
|
||||||||| |||| ||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||| |||| | | | | ||||||||||||| |
|
|
| T |
22357099 |
ttaagatctccaaaatttgaacatcctaatatgccgaaggagatttgcaagcttagaaagctacgccatttattaggcaactttatgtctttgattcagt |
22357000 |
T |
|
| Q |
130 |
tgaaggatggtattggaggcatgacatccctacaaactctaagtagagtacgcttagatgatggtgaagatgaaaatgataatagggtagtagagctaat |
229 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| ||| || ||||||||| ||||||||||||||||||||| || |||||| |||| |
|
|
| T |
22356999 |
tgaaggatggtattggaggcatgacatcgctacaaactctaaatagtgtttatttagatgattatgaagatgaaaatgataatagagttgtagagttaat |
22356900 |
T |
|
| Q |
230 |
catagagctaggaaagttaacacaacttagggaattgggcttggttgttgttagtagtaaatatatgagtgctatatcttcctcaatcaataagatgcaa |
329 |
Q |
| |
|
|||||| ||||| ||| || |||||||||||| ||||| | | ||| |||||||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
22356899 |
agaagagctgggaaaactaaagcagcttagggaattgagcttgagcggtcttaagagtaaatatatgagtggtatatcttcctcaatcaatgagatgcaa |
22356800 |
T |
|
| Q |
330 |
caactagagaaattaaatatt------tttggaatc-aaattagacat-----tttcattgatctggatttgaattcacccccacctaggcttgaacgtg |
417 |
Q |
| |
|
|| | |||||| ||| |||| | |||||| ||| || || ||||||||||| |||||||||||||||||||||| |||| |||||| |
|
|
| T |
22356799 |
aaattggagaaactaagtattaaaggagtcggaatcggaatgggatatggcgcattcattgatcttgatttgaattcacccccacctatgcttcaacgtg |
22356700 |
T |
|
| Q |
418 |
ttaaactctttgga----tatttaaataagtttcctgagtggatctcaaaactccaaaatcttgttaagctggatttgccacgtttgaaggaagtgaatg |
513 |
Q |
| |
|
||||||| | || | ||||||||||| ||||||||||| |||||||||||||||||||| |||||| || | | | || ||||||||||| |
|
|
| T |
22356699 |
ttaaact-tcaagaccttaaattaaataagttgcctgagtggatttcaaaactccaaaatcttgtcaagctgaatgtaagccttacgagggaagtgaatg |
22356601 |
T |
|
| Q |
514 |
atgcaatgaaattactccaacttatgccaaacttgctgtccctc |
557 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||| |||||||| |
|
|
| T |
22356600 |
atgcaatgaaattactccaaagtatgccaaatttgttgtccctc |
22356557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 58 - 295
Target Start/End: Complemental strand, 37929837 - 37929600
Alignment:
| Q |
58 |
atatgccgaaggagatttgcaagcttagaaagctacgtcattttttagtcgattgtctgtctttgattcaactgaaggatggtattggaggcatgacatc |
157 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| | | ||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
37929837 |
atatgccgaaggagatttgcaagcttagaaagctacgttgttttttaggctctgaaatgtctttgattcagttgaaggatggtattggaggcctgacatc |
37929738 |
T |
|
| Q |
158 |
cctacaaactctaagtagagtacgcttagatgatggtgaagatgaaaatgataatagggtagtagagctaatcatagagctaggaaagttaacacaactt |
257 |
Q |
| |
|
|||||||||||||| | |||| |||||||||| ||||||||||||||||||||| || |||||||||||| ||||||||||||| ||| ||| || |
|
|
| T |
37929737 |
cctacaaactctaaatgaagtatatttagatgatgatgaagatgaaaatgataatagagttgtagagctaatccaagagctaggaaagctaaaacagcta |
37929638 |
T |
|
| Q |
258 |
agggaattgggcttggttgttgttagtagtaaatatat |
295 |
Q |
| |
|
|||||||||||||||| | |||||| ||||||||||| |
|
|
| T |
37929637 |
agggaattgggcttggccggtgttaggagtaaatatat |
37929600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 66 - 410
Target Start/End: Complemental strand, 22352884 - 22352539
Alignment:
| Q |
66 |
aaggagatttgcaagcttagaaagctacgtcattttttagtcgattgtctgtctttgattcaactgaaggatggtattggaggcatgacatccctacaaa |
165 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||||| | | |||||||||||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
22352884 |
aaggagatttgcaagcttagaaagttacgccattttttaggcaaccaaatgtctttgattcaattgaaagatggtattggaggcatgacatccctacaaa |
22352785 |
T |
|
| Q |
166 |
-ctctaagtagagtacgcttagatgatggtgaagatgaaaatgataatagggtagtagagctaatcatagagctaggaaagttaacacaacttagggaat |
264 |
Q |
| |
|
|||||||| || |||||||| || |||||||||||||| | ||| || ||||||||||| ||||||||||||| ||| || || ||||| | |
|
|
| T |
22352784 |
actctaagtgatgtttatttagatgaaggagaagatgaaaatgacagtagagttgtagagctaattgaagagctaggaaagctaaatcagctaagggagt |
22352685 |
T |
|
| Q |
265 |
tgggcttggttgttgttagtagtaaatatatgagtgctatatcttcctcaatcaataagatgcaacaactagagaaattaaatatttttggaatcaaatt |
364 |
Q |
| |
|
||| |||| | |||||| |||||||||||||||||| ||||||||||||||||| |||||||| || | |||||| || ||||| ||||| || |
|
|
| T |
22352684 |
tggtcttgtacggtgttaggagtaaatatatgagtgctctatcttcctcaatcaatcagatgcaaaaattggagaaactatatattattggagtcgtgcc |
22352585 |
T |
|
| Q |
365 |
agacattttcattgatctggatttgaattcacccccacctaggctt |
410 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
22352584 |
ttacacattcattgatctggatttgaattcacccccacctaagctt |
22352539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 231 - 350
Target Start/End: Complemental strand, 22430121 - 22430002
Alignment:
| Q |
231 |
atagagctaggaaagttaacacaacttagggaattgggcttggttgttgttagtagtaaatatatgagtgctatatcttcctcaatcaataagatgcaac |
330 |
Q |
| |
|
||||||||||||||| ||| || || |||||||||||||||| | |||| | |||||||||||||||||| ||| ||||||||||||| ||||||| |
|
|
| T |
22430121 |
atagagctaggaaagctaaatcagctaagggaattgggcttggccggtgtttggagtaaatatatgagtgctttatgttcctcaatcaatcagatgcacg |
22430022 |
T |
|
| Q |
331 |
aactagagaaattaaatatt |
350 |
Q |
| |
|
|| | |||||| |||||||| |
|
|
| T |
22430021 |
aattggagaaactaaatatt |
22430002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 60 - 170
Target Start/End: Complemental strand, 22457577 - 22457467
Alignment:
| Q |
60 |
atgccgaaggagatttgcaagcttagaaagctacgtcattttttagtcgattgtctgtctttgattcaactgaaggatggtattggaggcatgacatccc |
159 |
Q |
| |
|
|||||||| ||||| ||||||||||||||| |||| ||||| ||| | | | |||||||||||||| | || |||||||| |||||||||||||||| |
|
|
| T |
22457577 |
atgccgaaagagatatgcaagcttagaaagttacgccatttcctaggctacaatatgtctttgattcaattaaaagatggtatcggaggcatgacatccc |
22457478 |
T |
|
| Q |
160 |
tacaaactcta |
170 |
Q |
| |
|
||||||||||| |
|
|
| T |
22457477 |
tacaaactcta |
22457467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 60 - 170
Target Start/End: Complemental strand, 22480558 - 22480448
Alignment:
| Q |
60 |
atgccgaaggagatttgcaagcttagaaagctacgtcattttttagtcgattgtctgtctttgattcaactgaaggatggtattggaggcatgacatccc |
159 |
Q |
| |
|
|||||||| ||||| ||||||||||||||| |||| ||||| ||| | | | |||||||||||||| | || |||||||| |||||||||||||||| |
|
|
| T |
22480558 |
atgccgaaagagatatgcaagcttagaaagttacgccatttcctaggctacaatatgtctttgattcaattaaaagatggtatcggaggcatgacatccc |
22480459 |
T |
|
| Q |
160 |
tacaaactcta |
170 |
Q |
| |
|
||||||||||| |
|
|
| T |
22480458 |
tacaaactcta |
22480448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 119 - 172
Target Start/End: Complemental strand, 22430213 - 22430160
Alignment:
| Q |
119 |
tttgattcaactgaaggatggtattggaggcatgacatccctacaaactctaag |
172 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22430213 |
tttgattgaattgaaggatggtattggaggcatgacatccctacaaactctaag |
22430160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 441 - 557
Target Start/End: Complemental strand, 22352535 - 22352419
Alignment:
| Q |
441 |
aagtttcctgagtggatctcaaaactccaaaatcttgttaagctggatttgccacgtttgaaggaagtgaatgatgcaatgaaattactccaacttatgc |
540 |
Q |
| |
|
||||| ||||||||||| ||||||||||| ||||||||||||||| | || | | |||| || ||||||||||||||||||||||||| ||||| |
|
|
| T |
22352535 |
aagttgcctgagtggatttcaaaactccagaatcttgttaagctgaaagtgaatcttccgaagccagagaatgatgcaatgaaattactccaaagtatgc |
22352436 |
T |
|
| Q |
541 |
caaacttgctgtccctc |
557 |
Q |
| |
|
|||| ||| |||||||| |
|
|
| T |
22352435 |
caaatttgttgtccctc |
22352419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 61 - 166
Target Start/End: Complemental strand, 30988380 - 30988275
Alignment:
| Q |
61 |
tgccgaaggagatttgcaagcttagaaagctacgtcattttttagtcgattgtctgtctttgattcaactgaaggatggtattggaggcatgacatccct |
160 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||| | ||| || | | | | | |||||||||||||| | |||||||||||||||| ||||||||||| |
|
|
| T |
30988380 |
tgccaaaggagattagcaagcttagaaagctaagacatcttatcggcactggactgtctttgattcagttaaaggatggtattggagagatgacatccct |
30988281 |
T |
|
| Q |
161 |
acaaac |
166 |
Q |
| |
|
|||||| |
|
|
| T |
30988280 |
acaaac |
30988275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 223 - 329
Target Start/End: Complemental strand, 22457426 - 22457320
Alignment:
| Q |
223 |
agctaatcatagagctaggaaagttaacacaacttagggaattgggcttggttgttgttagtagtaaatatatgagtgctatatcttcctcaatcaataa |
322 |
Q |
| |
|
|||||||| |||||||||||| ||| || || |||||||||| |||| | | |||||| || ||| ||||||||||||||||||||||||||| | |
|
|
| T |
22457426 |
agctaatccaagagctaggaaaactaaagcacctaagggaattggtcttgatcggtgttaggagcggatacatgagtgctatatcttcctcaatcaatga |
22457327 |
T |
|
| Q |
323 |
gatgcaa |
329 |
Q |
| |
|
||||||| |
|
|
| T |
22457326 |
gatgcaa |
22457320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 223 - 329
Target Start/End: Complemental strand, 22480407 - 22480301
Alignment:
| Q |
223 |
agctaatcatagagctaggaaagttaacacaacttagggaattgggcttggttgttgttagtagtaaatatatgagtgctatatcttcctcaatcaataa |
322 |
Q |
| |
|
|||||||| |||||||||||| ||| || || |||||||||| |||| | | |||||| || ||| ||||||||||||||||||||||||||| | |
|
|
| T |
22480407 |
agctaatccaagagctaggaaaactaaagcacctaagggaattggtcttgatcggtgttaggagcggatacatgagtgctatatcttcctcaatcaatga |
22480308 |
T |
|
| Q |
323 |
gatgcaa |
329 |
Q |
| |
|
||||||| |
|
|
| T |
22480307 |
gatgcaa |
22480301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 169
Target Start/End: Original strand, 22180855 - 22180910
Alignment:
| Q |
114 |
ctgtctttgattcaactgaaggatggtattggaggcatgacatccctacaaactct |
169 |
Q |
| |
|
||||||||||||||| | |||||||||||||||| |||| |||||||||||||| |
|
|
| T |
22180855 |
ctgtctttgattcaattaaaggatggtattggagagatgaagtccctacaaactct |
22180910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 117 - 169
Target Start/End: Original strand, 22106161 - 22106213
Alignment:
| Q |
117 |
tctttgattcaactgaaggatggtattggaggcatgacatccctacaaactct |
169 |
Q |
| |
|
|||||||||||| | |||||||||||||||| |||| |||||||||||||| |
|
|
| T |
22106161 |
tctttgattcaattaaaggatggtattggagagatgaagtccctacaaactct |
22106213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 117 - 169
Target Start/End: Original strand, 22116535 - 22116587
Alignment:
| Q |
117 |
tctttgattcaactgaaggatggtattggaggcatgacatccctacaaactct |
169 |
Q |
| |
|
|||||||||||| | |||||||||||||||| |||| |||||||||||||| |
|
|
| T |
22116535 |
tctttgattcaattaaaggatggtattggagagatgaagtccctacaaactct |
22116587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 59 - 170
Target Start/End: Complemental strand, 29604511 - 29604400
Alignment:
| Q |
59 |
tatgccgaaggagatttgcaagcttagaaagctacgtcattttttagtcgattgtctgtctttgattcaactgaaggatggtattggaggcatgacatcc |
158 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || |||||| ||| | || |||||| ||||||| ||||||||||| ||||||||||||||| | |
|
|
| T |
29604511 |
tatgccgaaggagatttgcaagcttagaaagctgcgccattttctaggcttgagtatgtcttggattcaattgaaggatggtcttggaggcatgacattc |
29604412 |
T |
|
| Q |
159 |
ctacaaactcta |
170 |
Q |
| |
|
|||||||||||| |
|
|
| T |
29604411 |
ctacaaactcta |
29604400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 166
Target Start/End: Complemental strand, 871800 - 871755
Alignment:
| Q |
121 |
tgattcaactgaaggatggtattggaggcatgacatccctacaaac |
166 |
Q |
| |
|
|||||||| | |||||||||||||||| ||||||||||||||||| |
|
|
| T |
871800 |
tgattcaattaaaggatggtattggagagatgacatccctacaaac |
871755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 166
Target Start/End: Complemental strand, 1233077 - 1233032
Alignment:
| Q |
121 |
tgattcaactgaaggatggtattggaggcatgacatccctacaaac |
166 |
Q |
| |
|
|||||||| | |||||||||||||||| ||||||||||||||||| |
|
|
| T |
1233077 |
tgattcaattaaaggatggtattggagagatgacatccctacaaac |
1233032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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