View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0536_low_1 (Length: 709)
Name: NF0536_low_1
Description: NF0536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0536_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 484; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 97 - 696
Target Start/End: Original strand, 6947447 - 6948034
Alignment:
| Q |
97 |
gttagtataaataaaaccatattcaaatccttattgaagctaactatcttaagctacaaggaatggaacaatcagtcattcagccttataaataattcaa |
196 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6947447 |
gttagtataaataaaaccatattcaaatccttattgaagctaactatcttaagctacaaggaatggaacaatcagtcattcagccttataaataattcaa |
6947546 |
T |
|
| Q |
197 |
taataagccagtaacatgtcttattaatgttaaggaacattcatgattatggaagcagaagaacaaatcaaactaattaaacacgagaacatgaacgtga |
296 |
Q |
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|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
6947547 |
taataagccagtaacatgccttat-aatgttaaggaacattcatgattatggaagcagaagaacaaatcaaactaatcaaacacgagaacatgaacgtga |
6947645 |
T |
|
| Q |
297 |
gcctgttatggaaagattacgtacacatgcactctaatatatgttgctactaccatcaannnnnnnnactgaaggaatttccttatgttgatatgcagat |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
6947646 |
gcctgttatggaaagattacgtacacatgcactctaatatatgttgctactaccatcaattttttttactgaaggaatttccttatgttgatatgcagat |
6947745 |
T |
|
| Q |
397 |
tcttgagtgcactcaatatttataaaccgaaagaaaaacatgtactaagcataggtaaatctacaatgcagttcttttcatgatgaaaacgaagtgtaac |
496 |
Q |
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|| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
6947746 |
tcatgagtgcactcaatatatataaaccgaaagaaaaacatgtactaagcataggtaaatctacaatgcagttc-tttcatgatgaaaacgaagcgtaac |
6947844 |
T |
|
| Q |
497 |
aaaaaatcccatgttaaaatataataatcaacaaaagcagtggcctcttaactatcttaaccatataaagttttagagactaaaccctagactctaatca |
596 |
Q |
| |
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| T |
6947845 |
ataatatcccatgttaaaatataataatcaac-aaagcagtggcc---------tcttaaccatataaagttttagagactaaaccctagactctaatca |
6947934 |
T |
|
| Q |
597 |
gttttcaaaagtgcattgattttcacgacgaacttcctcatcttcctcgggacggtaagcattcacaatgttgaaaatcttactaatctcctccggcttc |
696 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6947935 |
gttttcaaaagtgcattgattttcacaacgaacttcctcatcttccttgggacggtaagcattcacaatgttgaaaatcttactaatctcctccggcttc |
6948034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 365 - 548
Target Start/End: Original strand, 6950182 - 6950367
Alignment:
| Q |
365 |
ctgaaggaatttccttatgttgatatgcagattcttgagtgcactcaat-atttataaaccgaaagaa--aaacatgtactaagcataggtaaatcta-c |
460 |
Q |
| |
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|||||||||||| || |||||||||||||||||| ||| | ||||| || ||||||||||| || ||||| ||| ||||||||| |||||||| | |
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| T |
6950182 |
ctgaaggaatttgctcatgttgatatgcagattcatgaacgggctcaaacatacataaaccgaaacaacaaaacaagtaataagcatagataaatctaac |
6950281 |
T |
|
| Q |
461 |
aatgcagttcttttcatgatgaaaacgaagtgtaacaaaaaatcccatgttaaaatataataatcaacaaaagcagtggcctcttaac |
548 |
Q |
| |
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||||||||||||| |||||||||||||||| |||||| || |||||||||||||||||||||| |||| |||||||||| |||||||| |
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| T |
6950282 |
aatgcagttcttt-catgatgaaaacgaagcgtaacataatatcccatgttaaaatataataaacaac-aaagcagtggtctcttaac |
6950367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 579 - 693
Target Start/End: Complemental strand, 11160986 - 11160872
Alignment:
| Q |
579 |
aaccctagactctaatcagttttcaaaagtgcattgattttcacgacgaacttcctcatcttcctcgggacggtaagcattcacaatgttgaaaatctta |
678 |
Q |
| |
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|||||||||||||||||| | ||||||| |||||| |||| | ||| |||||||| |||||||| ||| |||| |||| | |||||||||| ||||| |
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| T |
11160986 |
aaccctagactctaatcattcgtcaaaagcccattgagtttcgctacggacttcctcctcttcctccggagtgtaatcattaataatgttgaaagtctta |
11160887 |
T |
|
| Q |
679 |
ctaatctcctccggc |
693 |
Q |
| |
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| ||||||||||||| |
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| T |
11160886 |
cgaatctcctccggc |
11160872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 135 - 212
Target Start/End: Original strand, 11931413 - 11931489
Alignment:
| Q |
135 |
gctaactatcttaagctacaaggaatggaacaatcagtcattcagccttataaataattcaataataagccagtaaca |
212 |
Q |
| |
|
||||||||||||| | |||||||||| |||||||||| ||| ||||||||| ||||||||||| ||| ||||||||| |
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|
| T |
11931413 |
gctaactatcttatgatacaaggaattgaacaatcagccatccagccttat-aataattcaattttaaaccagtaaca |
11931489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 570 - 601
Target Start/End: Original strand, 6950380 - 6950411
Alignment:
| Q |
570 |
tagagactaaaccctagactctaatcagtttt |
601 |
Q |
| |
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|
| T |
6950380 |
tagagactaaaccctagactctaatcagtttt |
6950411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 615 - 689
Target Start/End: Original strand, 11179071 - 11179145
Alignment:
| Q |
615 |
attttcacgacgaacttcctcatcttcctcgggacggtaagcattcacaatgttgaaaatcttactaatctcctc |
689 |
Q |
| |
|
|||||| |||||||||||||| |||||||| || |||| ||||| ||||||||||||||| | ||||||||| |
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|
| T |
11179071 |
attttcgcgacgaacttcctcctcttcctctggggtgtaatcattcttaatgttgaaaatcttgcgaatctcctc |
11179145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 417 - 461
Target Start/End: Complemental strand, 5647896 - 5647852
Alignment:
| Q |
417 |
tataaaccgaaagaaaaacatgtactaagcataggtaaatctaca |
461 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||| |||||||||| |
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| T |
5647896 |
tataaatcgaaagaaaaacaagtactaagcataaataaatctaca |
5647852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 102; Significance: 3e-50; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 551 - 696
Target Start/End: Original strand, 661917 - 662062
Alignment:
| Q |
551 |
tcttaaccatataaagttttagagactaaaccctagactctaatcagttttcaaaagtgcattgattttcacgacgaacttcctcatcttcctcgggacg |
650 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| || |||| ||| ||||| |
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|
| T |
661917 |
tcttaaccatataaaattttagagactaaaccctagactctaattagttttcaaaagtgcattgattttcacgacaaacttcatcctcttactccggacg |
662016 |
T |
|
| Q |
651 |
gtaagcattcacaatgttgaaaatcttactaatctcctccggcttc |
696 |
Q |
| |
|
||||||||| | ||||||||||||||||| ||| |||||||||||| |
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|
| T |
662017 |
gtaagcatttataatgttgaaaatcttaccaatatcctccggcttc |
662062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 111 - 187
Target Start/End: Complemental strand, 6522658 - 6522582
Alignment:
| Q |
111 |
aaccatattcaaatccttattgaagctaactatcttaagctacaaggaatggaacaatcagtcattcagccttataa |
187 |
Q |
| |
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||||||||||| ||||||||||| | |||| ||||||||||||||||||||||||||||| |||||| || ||||| |
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|
| T |
6522658 |
aaccatattcagatccttattgagacaaactttcttaagctacaaggaatggaacaatcagccattcaaccatataa |
6522582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 115 - 178
Target Start/End: Complemental strand, 32985209 - 32985146
Alignment:
| Q |
115 |
atattcaaatccttattgaagctaactatcttaagctacaaggaatggaacaatcagtcattca |
178 |
Q |
| |
|
|||| |||||||||||||| || | |||||||||||||||| ||||||||||||||| |||||| |
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|
| T |
32985209 |
atatccaaatccttattgaggcaatctatcttaagctacaatgaatggaacaatcagccattca |
32985146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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