View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0536_low_2 (Length: 635)

Name: NF0536_low_2
Description: NF0536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0536_low_2
NF0536_low_2
[»] chr5 (6 HSPs)
chr5 (489-624)||(22198924-22199059)
chr5 (550-594)||(31973134-31973178)
chr5 (551-590)||(15844510-15844549)
chr5 (551-594)||(30366688-30366731)
chr5 (551-589)||(32661593-32661631)
chr5 (557-590)||(38069577-38069610)
[»] chr1 (14 HSPs)
chr1 (489-624)||(21641343-21641477)
chr1 (545-589)||(17557702-17557746)
chr1 (551-594)||(19809943-19809986)
chr1 (551-594)||(19810683-19810726)
chr1 (551-594)||(19810996-19811039)
chr1 (552-590)||(10239511-10239549)
chr1 (548-591)||(13031123-13031166)
chr1 (559-594)||(19609178-19609213)
chr1 (556-591)||(40571606-40571641)
chr1 (557-591)||(347122-347156)
chr1 (550-590)||(347351-347391)
chr1 (551-591)||(7525066-7525106)
chr1 (547-594)||(29409945-29409993)
chr1 (551-591)||(41590214-41590254)
[»] scaffold0202 (2 HSPs)
scaffold0202 (307-486)||(18856-19036)
scaffold0202 (300-368)||(18776-18842)
[»] chr6 (2 HSPs)
chr6 (307-496)||(31044358-31044547)
chr6 (551-589)||(7938938-7938976)
[»] scaffold0018 (2 HSPs)
scaffold0018 (264-446)||(172846-173030)
scaffold0018 (130-200)||(172714-172784)
[»] chr7 (12 HSPs)
chr7 (551-594)||(39079926-39079969)
chr7 (551-594)||(14595866-14595909)
chr7 (551-591)||(16015394-16015434)
chr7 (551-594)||(38963368-38963411)
chr7 (548-594)||(1404836-1404882)
chr7 (557-591)||(21033611-21033645)
chr7 (548-590)||(39164707-39164749)
chr7 (551-588)||(14596178-14596215)
chr7 (551-588)||(16015706-16015743)
chr7 (556-593)||(27821113-27821150)
chr7 (548-584)||(1920245-1920281)
chr7 (560-592)||(36541840-36541872)
[»] chr4 (9 HSPs)
chr4 (551-594)||(17912817-17912860)
chr4 (557-592)||(50830708-50830743)
chr4 (551-591)||(46676697-46676737)
chr4 (551-590)||(24001542-24001581)
chr4 (551-594)||(30490939-30490982)
chr4 (551-596)||(22572429-22572475)
chr4 (557-594)||(3137471-3137508)
chr4 (555-591)||(50816715-50816752)
chr4 (557-593)||(49824632-49824668)
[»] chr2 (10 HSPs)
chr2 (547-593)||(33456038-33456084)
chr2 (557-590)||(3008439-3008472)
chr2 (551-594)||(5511787-5511830)
chr2 (550-581)||(13982118-13982149)
chr2 (550-591)||(11064261-11064303)
chr2 (549-594)||(22975518-22975563)
chr2 (550-587)||(26580055-26580092)
chr2 (547-591)||(5137484-5137528)
chr2 (551-591)||(7252250-7252290)
chr2 (548-592)||(11339672-11339715)
[»] chr8 (10 HSPs)
chr8 (551-594)||(45031151-45031195)
chr8 (551-592)||(10368683-10368724)
chr8 (551-594)||(6865201-6865245)
chr8 (550-594)||(26642663-26642707)
chr8 (551-590)||(14250623-14250662)
chr8 (559-594)||(45031369-45031404)
chr8 (550-596)||(294449-294495)
chr8 (551-592)||(30014156-30014197)
chr8 (557-594)||(30966073-30966110)
chr8 (557-594)||(34621963-34622000)
[»] chr3 (6 HSPs)
chr3 (550-593)||(39225009-39225052)
chr3 (551-590)||(31151832-31151871)
chr3 (551-590)||(54861605-54861644)
chr3 (551-593)||(43955324-43955366)
chr3 (551-592)||(1348875-1348916)
chr3 (553-593)||(45411897-45411937)


Alignment Details
Target: chr5 (Bit Score: 128; Significance: 7e-66; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 489 - 624
Target Start/End: Original strand, 22198924 - 22199059
Alignment:
Q  489 atttgaaagaatgatttggtgtgtagcgattatgtgaccagtgtccctgaactgtgactaactcttaaaatttgggttgggcctaactcaaccttacaaa 588  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22198924 atttgatagaatgatttggtgtgtagcgattgtgtgaccagtgtccctgaactgtgactaactcttaaaatttgggttgggcctaactcaaccttacaaa 22199023  T
Q  589 accggcctcttaagggcttttttgttggcaacagct 624  Q
    ||||||||||||||||||||||||||||||||||||    
T  22199024 accggcctcttaagggcttttttgttggcaacagct 22199059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 550 - 594
Target Start/End: Original strand, 31973134 - 31973178
Alignment:
Q  550 ctcttaaaatttgggttgggcctaactcaaccttacaaaaccggc 594  Q
    |||||| |||||||||||||||||||| |||||||||||||||||    
T  31973134 ctcttagaatttgggttgggcctaactgaaccttacaaaaccggc 31973178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 551 - 590
Target Start/End: Original strand, 15844510 - 15844549
Alignment:
Q  551 tcttaaaatttgggttgggcctaactcaaccttacaaaac 590  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  15844510 tcttaaaatttgggttgggcctaactcaatcttacaaaac 15844549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 551 - 594
Target Start/End: Complemental strand, 30366731 - 30366688
Alignment:
Q  551 tcttaaaatttgggttgggcctaactcaaccttacaaaaccggc 594  Q
    ||||| ||||||| |||||||||||||||||||||||| |||||    
T  30366731 tcttagaatttggtttgggcctaactcaaccttacaaagccggc 30366688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 551 - 589
Target Start/End: Complemental strand, 32661631 - 32661593
Alignment:
Q  551 tcttaaaatttgggttgggcctaactcaaccttacaaaa 589  Q
    ||||| ||||||||||||||||||||||| |||||||||    
T  32661631 tcttagaatttgggttgggcctaactcaatcttacaaaa 32661593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 557 - 590
Target Start/End: Original strand, 38069577 - 38069610
Alignment:
Q  557 aatttgggttgggcctaactcaaccttacaaaac 590  Q
    |||||||||||||||||||||||||||| |||||    
T  38069577 aatttgggttgggcctaactcaaccttataaaac 38069610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 112; Significance: 3e-56; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 489 - 624
Target Start/End: Original strand, 21641343 - 21641477
Alignment:
Q  489 atttgaaagaatgatttggtgtgtagcgattatgtgaccagtgtccctgaactgtgactaactcttaaaatttgggttgggcctaactcaaccttacaaa 588  Q
    |||||| |||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  21641343 atttgatagaatgatttagtgtgtagcgattgtgtgaccagtgtccctgatctgtgactaactcttaaaatttgggttgggcctaactcaaccttacaaa 21641442  T
Q  589 accggcctcttaagggcttttttgttggcaacagct 624  Q
    ||||||||| ||||||||||||||||||||||||||    
T  21641443 accggcctc-taagggcttttttgttggcaacagct 21641477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 545 - 589
Target Start/End: Original strand, 17557702 - 17557746
Alignment:
Q  545 actaactcttaaaatttgggttgggcctaactcaaccttacaaaa 589  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||    
T  17557702 actaattcttagaatttgggttgggcctaactcaaccttacaaaa 17557746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 551 - 594
Target Start/End: Original strand, 19809943 - 19809986
Alignment:
Q  551 tcttaaaatttgggttgggcctaactcaaccttacaaaaccggc 594  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||    
T  19809943 tcttaaattttgggttgggcctaactcaaccttacaaaatcggc 19809986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 551 - 594
Target Start/End: Original strand, 19810683 - 19810726
Alignment:
Q  551 tcttaaaatttgggttgggcctaactcaaccttacaaaaccggc 594  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||    
T  19810683 tcttaaaatttgggttgggcctagctcaaccttacaaaatcggc 19810726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 551 - 594
Target Start/End: Original strand, 19810996 - 19811039
Alignment:
Q  551 tcttaaaatttgggttgggcctaactcaaccttacaaaaccggc 594  Q
    |||||||||||||||| ||||||| |||||||||||||||||||    
T  19810996 tcttaaaatttgggttcggcctaagtcaaccttacaaaaccggc 19811039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 552 - 590
Target Start/End: Complemental strand, 10239549 - 10239511
Alignment:
Q  552 cttaaaatttgggttgggcctaactcaaccttacaaaac 590  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  10239549 cttaaaacttgggttgggcctaactcaaccttacaaaac 10239511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 548 - 591
Target Start/End: Original strand, 13031123 - 13031166
Alignment:
Q  548 aactcttaaaatttgggttgggcctaactcaaccttacaaaacc 591  Q
    |||||||| |||||||||||| |||||||||||| |||||||||    
T  13031123 aactcttagaatttgggttggacctaactcaaccctacaaaacc 13031166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 559 - 594
Target Start/End: Original strand, 19609178 - 19609213
Alignment:
Q  559 tttgggttgggcctaactcaaccttacaaaaccggc 594  Q
    ||||||||| ||||||||||||||||||||||||||    
T  19609178 tttgggttgagcctaactcaaccttacaaaaccggc 19609213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 556 - 591
Target Start/End: Complemental strand, 40571641 - 40571606
Alignment:
Q  556 aaatttgggttgggcctaactcaaccttacaaaacc 591  Q
    |||||||| |||||||||||||||||||||||||||    
T  40571641 aaatttggattgggcctaactcaaccttacaaaacc 40571606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 557 - 591
Target Start/End: Complemental strand, 347156 - 347122
Alignment:
Q  557 aatttgggttgggcctaactcaaccttacaaaacc 591  Q
    |||||||||||| ||||||||||||||||||||||    
T  347156 aatttgggttggccctaactcaaccttacaaaacc 347122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 550 - 590
Target Start/End: Complemental strand, 347391 - 347351
Alignment:
Q  550 ctcttaaaatttgggttgggcctaactcaaccttacaaaac 590  Q
    |||||| |||||||||||  |||||||||||||||||||||    
T  347391 ctcttagaatttgggttgaacctaactcaaccttacaaaac 347351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 551 - 591
Target Start/End: Complemental strand, 7525106 - 7525066
Alignment:
Q  551 tcttaaaatttgggttgggcctaactcaaccttacaaaacc 591  Q
    ||||| ||||||| ||| |||||||||||||||||||||||    
T  7525106 tcttagaatttggattgagcctaactcaaccttacaaaacc 7525066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 547 - 594
Target Start/End: Original strand, 29409945 - 29409993
Alignment:
Q  547 taactcttaaaatttgggttgggcctaactcaa-ccttacaaaaccggc 594  Q
    ||||||||| ||||| || |||||||||||||| |||||||||||||||    
T  29409945 taactcttagaatttagggtgggcctaactcaacccttacaaaaccggc 29409993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 551 - 591
Target Start/End: Original strand, 41590214 - 41590254
Alignment:
Q  551 tcttaaaatttgggttgggcctaactcaaccttacaaaacc 591  Q
    ||||| ||||| ||||||||| |||||||||||||||||||    
T  41590214 tcttagaatttaggttgggccaaactcaaccttacaaaacc 41590254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 307 - 486
Target Start/End: Original strand, 18856 - 19036
Alignment:
Q  307 tgaatcttggcatattatgaatcg-agagtcaaaaggattaacttggataacatcattgaaattgaatttttacttctgttttcgtcttgatgcgcccgt 405  Q
    ||||| |||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||| ||| || ||    
T  18856 tgaattttggcatattatgaataggagagtcaaaaggattaact-ggataacatcattgaaattgaatttttatttctgtttttgtcttgctgcacctgt 18954  T
Q  406 attgaattt-tggcatccgattcagaagcttgccaagcgtttctgtggtccatataagctggtcagacggataggtgaagta 486  Q
    ||||||||| |||||||||||| ||||| |||||||  |||||| |||||| ||||||||||||||| ||||||||||||||    
T  18955 attgaatttatggcatccgattaagaagtttgccaattgtttctatggtccctataagctggtcagaaggataggtgaagta 19036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 300 - 368
Target Start/End: Original strand, 18776 - 18842
Alignment:
Q  300 ttttttatgaatcttggcatattatgaatcgagagtcaaaaggattaacttggataacatcattgaaat 368  Q
    |||||||||||| ||||||| |||||||   |||||||||||||||||| | |||||||||||||||||    
T  18776 ttttttatgaattttggcattttatgaa-gtagagtcaaaaggattaac-tagataacatcattgaaat 18842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 91; Significance: 9e-44; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 307 - 496
Target Start/End: Complemental strand, 31044547 - 31044358
Alignment:
Q  307 tgaatcttggcatattatgaatcg-agagtcaaaaggattaacttggataacatcattgaaattgaatttttacttctgttttcgtcttgatgcgcccgt 405  Q
    ||||| ||||||||||||| || | |||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||| |||||| |  | ||||    
T  31044547 tgaattttggcatattatgcattggagagtcaaaaggataaact-ggataacatcattgaaattggatttttacttctgttttggtcttgctatggccgt 31044449  T
Q  406 attgaattttggcatccgattcagaagcttgccaagcgtttctgtggtccatataagctggtcagacggataggtgaagtatcatttgaaa 496  Q
    ||||||||||||  || ||||||||||||||||||| ||||||||| ||  |||||||  |||||||||||||||||| ||| ||||||||    
T  31044448 attgaattttggattctgattcagaagcttgccaagtgtttctgtgatctctataagccagtcagacggataggtgaactattatttgaaa 31044358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 551 - 589
Target Start/End: Original strand, 7938938 - 7938976
Alignment:
Q  551 tcttaaaatttgggttgggcctaactcaaccttacaaaa 589  Q
    |||||||||||||||| |||||||||||||| |||||||    
T  7938938 tcttaaaatttgggtttggcctaactcaaccctacaaaa 7938976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 85; Significance: 3e-40; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 264 - 446
Target Start/End: Original strand, 172846 - 173030
Alignment:
Q  264 aaagataatggatagttaaacaatttcgattagacc---ttttttatgaatcttggcatattatgaatcg-agagtcaaaaggattaacttggataacat 359  Q
    |||||||||||||| ||||||||||||  |||||||   ||||||||| || |||||||||||||  | | ||||||||||||||||||| | ||||| |    
T  172846 aaagataatggata-ttaaacaatttcagttagacccttttttttatggattttggcatattatgtgttggagagtcaaaaggattaactag-ataacct 172943  T
Q  360 cattgaaattgaatttttacttctgttttcgtcttgatgcgcccgtattgaattttggcatccgattcagaagcttgccaagcgttt 446  Q
    |||||||||||||||| |||||||||||| |||||| |||  ||||||||||||||||||||||||| ||||| |||||||||||||    
T  172944 cattgaaattgaatttgtacttctgtttttgtcttgttgcatccgtattgaattttggcatccgattaagaagtttgccaagcgttt 173030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 172714 - 172784
Alignment:
Q  130 gtcaagcttacttaaaggtttgtccatgatatcaagcattttacgacattttatcctatgtccatatagat 200  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  172714 gtcaagcttacttaaaggtttgtccatgatatcaagcatttttcgacattttagcctatgtccatatagat 172784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 551 - 594
Target Start/End: Original strand, 39079926 - 39079969
Alignment:
Q  551 tcttaaaatttgggttgggcctaactcaaccttacaaaaccggc 594  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  39079926 tcttaaaatttgggttgggcctaactaaaccttacaaaaccggc 39079969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 551 - 594
Target Start/End: Original strand, 14595866 - 14595909
Alignment:
Q  551 tcttaaaatttgggttgggcctaactcaaccttacaaaaccggc 594  Q
    ||||||||||||| |||| |||||||||||||||||||||||||    
T  14595866 tcttaaaatttggattggacctaactcaaccttacaaaaccggc 14595909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 551 - 591
Target Start/End: Original strand, 16015394 - 16015434
Alignment:
Q  551 tcttaaaatttgggttgggcctaactcaaccttacaaaacc 591  Q
    ||||||||||||| |||| ||||||||||||||||||||||    
T  16015394 tcttaaaatttggattggacctaactcaaccttacaaaacc 16015434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 551 - 594
Target Start/End: Original strand, 38963368 - 38963411
Alignment:
Q  551 tcttaaaatttgggttgggcctaactcaaccttacaaaaccggc 594  Q
    ||||| ||||||||||| ||||||||||||||||| ||||||||    
T  38963368 tcttagaatttgggttgagcctaactcaaccttaccaaaccggc 38963411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 548 - 594
Target Start/End: Complemental strand, 1404882 - 1404836
Alignment:
Q  548 aactcttaaaatttgggttgggcctaactcaaccttacaaaaccggc 594  Q
    |||||||||||||||||||| |||||||| |||| ||||||| ||||    
T  1404882 aactcttaaaatttgggttgagcctaacttaaccatacaaaatcggc 1404836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 557 - 591
Target Start/End: Original strand, 21033611 - 21033645
Alignment:
Q  557 aatttgggttgggcctaactcaaccttacaaaacc 591  Q
    ||||||| |||||||||||||||||||||||||||    
T  21033611 aatttggattgggcctaactcaaccttacaaaacc 21033645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 548 - 590
Target Start/End: Complemental strand, 39164749 - 39164707
Alignment:
Q  548 aactcttaaaatttgggttgggcctaactcaaccttacaaaac 590  Q
    ||||| || |||||||||||||||||||||||||||| |||||    
T  39164749 aactcctagaatttgggttgggcctaactcaaccttataaaac 39164707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 551 - 588
Target Start/End: Original strand, 14596178 - 14596215
Alignment:
Q  551 tcttaaaatttgggttgggcctaactcaaccttacaaa 588  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  14596178 tcttaaaattttgattgggcctaactcaaccttacaaa 14596215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 551 - 588
Target Start/End: Original strand, 16015706 - 16015743
Alignment:
Q  551 tcttaaaatttgggttgggcctaactcaaccttacaaa 588  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  16015706 tcttaaaattttgattgggcctaactcaaccttacaaa 16015743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 556 - 593
Target Start/End: Complemental strand, 27821150 - 27821113
Alignment:
Q  556 aaatttgggttgggcctaactcaaccttacaaaaccgg 593  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  27821150 aaatttgggttggacctaactcaaccttaaaaaaccgg 27821113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 548 - 584
Target Start/End: Complemental strand, 1920281 - 1920245
Alignment:
Q  548 aactcttaaaatttgggttgggcctaactcaacctta 584  Q
    |||||||| ||||| ||||||||||||||||||||||    
T  1920281 aactcttagaattttggttgggcctaactcaacctta 1920245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 560 - 592
Target Start/End: Original strand, 36541840 - 36541872
Alignment:
Q  560 ttgggttgggcctaactcaaccttacaaaaccg 592  Q
    ||||||||||||||||| |||||||||||||||    
T  36541840 ttgggttgggcctaactaaaccttacaaaaccg 36541872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 551 - 594
Target Start/End: Complemental strand, 17912860 - 17912817
Alignment:
Q  551 tcttaaaatttgggttgggcctaactcaaccttacaaaaccggc 594  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  17912860 tcttaaaatttgggttgggcctaactcaaccctacaaaaccggc 17912817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 557 - 592
Target Start/End: Original strand, 50830708 - 50830743
Alignment:
Q  557 aatttgggttgggcctaactcaaccttacaaaaccg 592  Q
    ||||||||||||||||||||||||||||||||||||    
T  50830708 aatttgggttgggcctaactcaaccttacaaaaccg 50830743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 551 - 591
Target Start/End: Complemental strand, 46676737 - 46676697
Alignment:
Q  551 tcttaaaatttgggttgggcctaactcaaccttacaaaacc 591  Q
    |||||||||||||||||| |||||||||||| |||||||||    
T  46676737 tcttaaaatttgggttggacctaactcaaccctacaaaacc 46676697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 551 - 590
Target Start/End: Complemental strand, 24001581 - 24001542
Alignment:
Q  551 tcttaaaatttgggttgggcctaactcaaccttacaaaac 590  Q
    ||||| |||||||||||||| |||||||||||||||||||    
T  24001581 tcttagaatttgggttgggcttaactcaaccttacaaaac 24001542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 551 - 594
Target Start/End: Original strand, 30490939 - 30490982
Alignment:
Q  551 tcttaaaatttgggttgggcctaactcaaccttacaaaaccggc 594  Q
    ||||| ||||||||||||||||||||||||||||| ||| ||||    
T  30490939 tcttagaatttgggttgggcctaactcaaccttacgaaaacggc 30490982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 551 - 596
Target Start/End: Complemental strand, 22572475 - 22572429
Alignment:
Q  551 tcttaaaatttgggttgggcctaactcaac-cttacaaaaccggcct 596  Q
    ||||||| |||||||||| ||||||||||| ||||||||||||||||    
T  22572475 tcttaaattttgggttggtcctaactcaactcttacaaaaccggcct 22572429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 557 - 594
Target Start/End: Original strand, 3137471 - 3137508
Alignment:
Q  557 aatttgggttgggcctaactcaaccttacaaaaccggc 594  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  3137471 aatttgggttgggcctaaatcaaccttaaaaaaccggc 3137508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 555 - 591
Target Start/End: Original strand, 50816715 - 50816752
Alignment:
Q  555 aaaatttgggttgggcctaactcaacc-ttacaaaacc 591  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  50816715 aaaatttgggttgggcctaactcaaccattacaaaacc 50816752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 557 - 593
Target Start/End: Complemental strand, 49824668 - 49824632
Alignment:
Q  557 aatttgggttgggcctaactcaaccttacaaaaccgg 593  Q
    |||||||||| |||||||||||||| |||||||||||    
T  49824668 aatttgggtttggcctaactcaaccctacaaaaccgg 49824632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 547 - 593
Target Start/End: Complemental strand, 33456084 - 33456038
Alignment:
Q  547 taactcttaaaatttgggttgggcctaactcaaccttacaaaaccgg 593  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||    
T  33456084 taactattagaatttgggttgggcctaactcaaccttacaaaaccgg 33456038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 557 - 590
Target Start/End: Complemental strand, 3008472 - 3008439
Alignment:
Q  557 aatttgggttgggcctaactcaaccttacaaaac 590  Q
    ||||||||||||||||||||||||||||||||||    
T  3008472 aatttgggttgggcctaactcaaccttacaaaac 3008439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 551 - 594
Target Start/End: Original strand, 5511787 - 5511830
Alignment:
Q  551 tcttaaaatttgggttgggcctaactcaaccttacaaaaccggc 594  Q
    ||||| |||||||||||||||||||||||||||  |||||||||    
T  5511787 tcttagaatttgggttgggcctaactcaaccttctaaaaccggc 5511830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 550 - 581
Target Start/End: Original strand, 13982118 - 13982149
Alignment:
Q  550 ctcttaaaatttgggttgggcctaactcaacc 581  Q
    ||||||||||||||||||||||||||||||||    
T  13982118 ctcttaaaatttgggttgggcctaactcaacc 13982149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 550 - 591
Target Start/End: Original strand, 11064261 - 11064303
Alignment:
Q  550 ctcttaaaatttgggttgggcctaactcaac-cttacaaaacc 591  Q
    |||||| |||||||||||||||||||||||| |||||||||||    
T  11064261 ctcttagaatttgggttgggcctaactcaactcttacaaaacc 11064303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 549 - 594
Target Start/End: Original strand, 22975518 - 22975563
Alignment:
Q  549 actcttaaaatttgggttgggcctaactcaaccttacaaaaccggc 594  Q
    ||||||||| |||||||||||| ||||||| || ||||||||||||    
T  22975518 actcttaaattttgggttgggcttaactcagccctacaaaaccggc 22975563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 550 - 587
Target Start/End: Original strand, 26580055 - 26580092
Alignment:
Q  550 ctcttaaaatttgggttgggcctaactcaaccttacaa 587  Q
    |||||| |||||||||||||||||| ||||||||||||    
T  26580055 ctcttagaatttgggttgggcctaattcaaccttacaa 26580092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 547 - 591
Target Start/End: Complemental strand, 5137528 - 5137484
Alignment:
Q  547 taactcttaaaatttgggttgggcctaactcaaccttacaaaacc 591  Q
    ||||||||| |||||||||||| || ||||||||| |||||||||    
T  5137528 taactcttagaatttgggttggaccaaactcaaccgtacaaaacc 5137484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 551 - 591
Target Start/End: Complemental strand, 7252290 - 7252250
Alignment:
Q  551 tcttaaaatttgggttgggcctaactcaaccttacaaaacc 591  Q
    ||||| ||||||||||| ||||||||||||| |||||||||    
T  7252290 tcttagaatttgggttgagcctaactcaaccctacaaaacc 7252250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 548 - 592
Target Start/End: Original strand, 11339672 - 11339715
Alignment:
Q  548 aactcttaaaatttgggttgggcctaactcaaccttacaaaaccg 592  Q
    |||||||| |||||||||||||||||||| || ||||||||||||    
T  11339672 aactcttagaatttgggttgggcctaact-aaacttacaaaaccg 11339715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 551 - 594
Target Start/End: Original strand, 45031151 - 45031195
Alignment:
Q  551 tcttaaaattt-gggttgggcctaactcaaccttacaaaaccggc 594  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  45031151 tcttaaaattttgggttgggcctaactcaaccttacaaaaccggc 45031195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 551 - 592
Target Start/End: Complemental strand, 10368724 - 10368683
Alignment:
Q  551 tcttaaaatttgggttgggcctaactcaaccttacaaaaccg 592  Q
    ||||||||||||||||||| ||||||||||| ||||||||||    
T  10368724 tcttaaaatttgggttgggactaactcaaccctacaaaaccg 10368683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 551 - 594
Target Start/End: Original strand, 6865201 - 6865245
Alignment:
Q  551 tcttaaaatttgggttgggcctaactcaa-ccttacaaaaccggc 594  Q
    |||||||||||||||||||| |||||||| |||||||||||||||    
T  6865201 tcttaaaatttgggttgggcttaactcaacccttacaaaaccggc 6865245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 550 - 594
Target Start/End: Complemental strand, 26642707 - 26642663
Alignment:
Q  550 ctcttaaaatttgggttgggcctaactcaaccttacaaaaccggc 594  Q
    |||||| |||||||||||||||||| |||||||||| ||||||||    
T  26642707 ctcttagaatttgggttgggcctaaatcaaccttaccaaaccggc 26642663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 551 - 590
Target Start/End: Original strand, 14250623 - 14250662
Alignment:
Q  551 tcttaaaatttgggttgggcctaactcaaccttacaaaac 590  Q
    |||||||| |||||||||| ||||||||||||||||||||    
T  14250623 tcttaaaaattgggttgggtctaactcaaccttacaaaac 14250662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 559 - 594
Target Start/End: Original strand, 45031369 - 45031404
Alignment:
Q  559 tttgggttgggcctaactcaaccttacaaaaccggc 594  Q
    ||||||||||||||||| ||||||||||||||||||    
T  45031369 tttgggttgggcctaacacaaccttacaaaaccggc 45031404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 550 - 596
Target Start/End: Complemental strand, 294495 - 294449
Alignment:
Q  550 ctcttaaaatttgggttgggcctaactcaaccttacaaaaccggcct 596  Q
    ||||||||||||||||||| |||||||||| | ||||||| ||||||    
T  294495 ctcttaaaatttgggttggacctaactcaatcctacaaaatcggcct 294449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 551 - 592
Target Start/End: Original strand, 30014156 - 30014197
Alignment:
Q  551 tcttaaaatttgggttgggcctaactcaaccttacaaaaccg 592  Q
    ||||||||||| ||||||| ||||||||||| ||||||||||    
T  30014156 tcttaaaatttaggttgggtctaactcaaccctacaaaaccg 30014197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 557 - 594
Target Start/End: Original strand, 30966073 - 30966110
Alignment:
Q  557 aatttgggttgggcctaactcaaccttacaaaaccggc 594  Q
    |||||||||||||||||||||||  |||||||||||||    
T  30966073 aatttgggttgggcctaactcaaatttacaaaaccggc 30966110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 557 - 594
Target Start/End: Complemental strand, 34622000 - 34621963
Alignment:
Q  557 aatttgggttgggcctaactcaaccttacaaaaccggc 594  Q
    |||||||||||||||||||||| |||||||| ||||||    
T  34622000 aatttgggttgggcctaactcagccttacaacaccggc 34621963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 550 - 593
Target Start/End: Original strand, 39225009 - 39225052
Alignment:
Q  550 ctcttaaaatttgggttgggcctaactcaaccttacaaaaccgg 593  Q
    |||||| ||||||||||||||||||||||||||||||| |||||    
T  39225009 ctcttagaatttgggttgggcctaactcaaccttacaagaccgg 39225052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 551 - 590
Target Start/End: Complemental strand, 31151871 - 31151832
Alignment:
Q  551 tcttaaaatttgggttgggcctaactcaaccttacaaaac 590  Q
    ||||| ||| ||||||||||||||||||||||||||||||    
T  31151871 tcttagaatatgggttgggcctaactcaaccttacaaaac 31151832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 551 - 590
Target Start/End: Complemental strand, 54861644 - 54861605
Alignment:
Q  551 tcttaaaatttgggttgggcctaactcaaccttacaaaac 590  Q
    |||||||||||||||||||| ||||||||||| |||||||    
T  54861644 tcttaaaatttgggttgggcgtaactcaacctaacaaaac 54861605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 551 - 593
Target Start/End: Original strand, 43955324 - 43955366
Alignment:
Q  551 tcttaaaatttgggttgggcctaactcaaccttacaaaaccgg 593  Q
    ||||| ||||||||||| |||||||||||||||| ||||||||    
T  43955324 tcttagaatttgggttgagcctaactcaaccttataaaaccgg 43955366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 551 - 592
Target Start/End: Original strand, 1348875 - 1348916
Alignment:
Q  551 tcttaaaatttgggttgggcctaactcaaccttacaaaaccg 592  Q
    ||||||||||||||||| | ||||||||||| ||||||||||    
T  1348875 tcttaaaatttgggttgagtctaactcaaccatacaaaaccg 1348916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 553 - 593
Target Start/End: Original strand, 45411897 - 45411937
Alignment:
Q  553 ttaaaatttgggttgggcctaactcaaccttacaaaaccgg 593  Q
    |||||||||||||||| ||||||||||| ||||| ||||||    
T  45411897 ttaaaatttgggttggacctaactcaactttacacaaccgg 45411937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1747 times since January 2019
Visitors: 3673