View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0536_low_3 (Length: 416)

Name: NF0536_low_3
Description: NF0536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0536_low_3
NF0536_low_3
[»] chr5 (1 HSPs)
chr5 (246-415)||(732460-732629)


Alignment Details
Target: chr5 (Bit Score: 158; Significance: 6e-84; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 246 - 415
Target Start/End: Complemental strand, 732629 - 732460
Alignment:
Q  246 aagatttgatgatgtagagagcatttaggttggaattgttgacaggtgagccaacgaactttgcattgtgcacaaaataacctatgacaaacgggacact 345  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  732629 aagatttgatgatgtagagagcatttaggttggaattgttgacaggtgagccaacgaactttgcattgtgcacaaaataacctatgacaaacgggacact 732530  T
Q  346 ctgtatgtatcacggtttcaaacctatcattgagcaaggaaactgaacaatcatagaatggacaattcac 415  Q
     |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  732529 atgtacgtatcacggtttcaaacctatcattgagcaacgaaactgaacaatcatagaatggacaattcac 732460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University