View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0536_low_6 (Length: 316)

Name: NF0536_low_6
Description: NF0536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0536_low_6
NF0536_low_6
[»] chr8 (3 HSPs)
chr8 (30-237)||(10247376-10247582)
chr8 (1-32)||(36077344-36077375)
chr8 (1-29)||(3831782-3831810)
[»] chr4 (2 HSPs)
chr4 (1-34)||(24639662-24639695)
chr4 (1-29)||(18773282-18773310)
[»] chr3 (2 HSPs)
chr3 (1-30)||(13076292-13076321)
chr3 (1-30)||(53057657-53057686)
[»] chr2 (3 HSPs)
chr2 (1-30)||(24415845-24415874)
chr2 (1-29)||(19355687-19355715)
chr2 (1-29)||(24428417-24428445)
[»] scaffold0014 (1 HSPs)
scaffold0014 (1-29)||(112809-112837)
[»] chr7 (3 HSPs)
chr7 (1-29)||(21691617-21691645)
chr7 (1-29)||(24795648-24795676)
chr7 (4-32)||(25806462-25806490)
[»] chr6 (1 HSPs)
chr6 (1-29)||(14101370-14101398)
[»] chr1 (2 HSPs)
chr1 (1-29)||(18517914-18517942)
chr1 (1-29)||(20110795-20110823)


Alignment Details
Target: chr8 (Bit Score: 141; Significance: 6e-74; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 30 - 237
Target Start/End: Complemental strand, 10247582 - 10247376
Alignment:
Q  30 agtgtaaccaaagaaagtaaaatatattaggaaaaaggcggaaaggataagaacggtattgtttttaataagaatggannnnnnnnnnctaaccatgtaa 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||          ||||||||||||    
T  10247582 agtgtaaccaaagaaagtaaaatatattaggaaaaaggcggaaaggataagaacggtgttgtttttaataagaatgga-tttttttttctaaccatgtaa 10247484  T
Q  130 taatttgcaaatatccactgaaatagtcaatgaataagaatgtannnnnnnncttctgaccatataataattcgcaaatatccaccgatgttgtcaatga 229  Q
    | ||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10247483 tgatttgcaaatatccactgaaatagtcaatgaataagaatgtatttttcttcttctgaccatataataattcgcaaatatccaccgatgttgtcaatga 10247384  T
Q  230 taatctat 237  Q
    ||||||||    
T  10247383 taatctat 10247376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 36077375 - 36077344
Alignment:
Q  1 ccccctttcttgtgtttttctcaccttcaagt 32  Q
    ||||||||||||||||||||||||||||||||    
T  36077375 ccccctttcttgtgtttttctcaccttcaagt 36077344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 3831810 - 3831782
Alignment:
Q  1 ccccctttcttgtgtttttctcaccttca 29  Q
    |||||||||||||||||||||||||||||    
T  3831810 ccccctttcttgtgtttttctcaccttca 3831782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 24639695 - 24639662
Alignment:
Q  1 ccccctttcttgtgtttttctcaccttcaagtgt 34  Q
    ||||| ||||||||||||||||||||||||||||    
T  24639695 ccccccttcttgtgtttttctcaccttcaagtgt 24639662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 18773310 - 18773282
Alignment:
Q  1 ccccctttcttgtgtttttctcaccttca 29  Q
    |||||||||||||||||||||||||||||    
T  18773310 ccccctttcttgtgtttttctcaccttca 18773282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 13076321 - 13076292
Alignment:
Q  1 ccccctttcttgtgtttttctcaccttcaa 30  Q
    ||||||||||||||||||||||||||||||    
T  13076321 ccccctttcttgtgtttttctcaccttcaa 13076292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 53057657 - 53057686
Alignment:
Q  1 ccccctttcttgtgtttttctcaccttcaa 30  Q
    ||||||||||||||||||||||||||||||    
T  53057657 ccccctttcttgtgtttttctcaccttcaa 53057686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 24415845 - 24415874
Alignment:
Q  1 ccccctttcttgtgtttttctcaccttcaa 30  Q
    ||||||||||||||||||||||||||||||    
T  24415845 ccccctttcttgtgtttttctcaccttcaa 24415874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 19355715 - 19355687
Alignment:
Q  1 ccccctttcttgtgtttttctcaccttca 29  Q
    |||||||||||||||||||||||||||||    
T  19355715 ccccctttcttgtgtttttctcaccttca 19355687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 24428417 - 24428445
Alignment:
Q  1 ccccctttcttgtgtttttctcaccttca 29  Q
    |||||||||||||||||||||||||||||    
T  24428417 ccccctttcttgtgtttttctcaccttca 24428445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 112809 - 112837
Alignment:
Q  1 ccccctttcttgtgtttttctcaccttca 29  Q
    |||||||||||||||||||||||||||||    
T  112809 ccccctttcttgtgtttttctcaccttca 112837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 21691645 - 21691617
Alignment:
Q  1 ccccctttcttgtgtttttctcaccttca 29  Q
    |||||||||||||||||||||||||||||    
T  21691645 ccccctttcttgtgtttttctcaccttca 21691617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 24795648 - 24795676
Alignment:
Q  1 ccccctttcttgtgtttttctcaccttca 29  Q
    |||||||||||||||||||||||||||||    
T  24795648 ccccctttcttgtgtttttctcaccttca 24795676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 32
Target Start/End: Complemental strand, 25806490 - 25806462
Alignment:
Q  4 cctttcttgtgtttttctcaccttcaagt 32  Q
    |||||||||||||||||||||||||||||    
T  25806490 cctttcttgtgtttttctcaccttcaagt 25806462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 14101370 - 14101398
Alignment:
Q  1 ccccctttcttgtgtttttctcaccttca 29  Q
    |||||||||||||||||||||||||||||    
T  14101370 ccccctttcttgtgtttttctcaccttca 14101398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 18517914 - 18517942
Alignment:
Q  1 ccccctttcttgtgtttttctcaccttca 29  Q
    |||||||||||||||||||||||||||||    
T  18517914 ccccctttcttgtgtttttctcaccttca 18517942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 20110795 - 20110823
Alignment:
Q  1 ccccctttcttgtgtttttctcaccttca 29  Q
    |||||||||||||||||||||||||||||    
T  20110795 ccccctttcttgtgtttttctcaccttca 20110823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1841 times since January 2019
Visitors: 3673