View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0536_low_8 (Length: 274)
Name: NF0536_low_8
Description: NF0536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0536_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 33 - 231
Target Start/End: Original strand, 9438509 - 9438707
Alignment:
| Q |
33 |
caacaaaataaaattaaaagatacacgacttttcattgttgaacctccaatactcaattgcctaaagtctcctgccgctccatgtctattacagtaacac |
132 |
Q |
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| T |
9438509 |
caacaaaataaaattaaaagaaacacgactcttcatagttgaacctccaatactcaattgcctaaagtctcctgccgctccatgtctattacactaacac |
9438608 |
T |
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| Q |
133 |
caccttagtgggttacagattcaaagcagctgaacttaagattaaaactgtttgagttaatgactcgtccacggtagagaaacagacacaaacaatatt |
231 |
Q |
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| T |
9438609 |
caccttagcgggttacagattcaaagcagctgaacttaacattaaaactgtttgagttaacgactcgtccacggtagagaaacagacacaaacaatatt |
9438707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 84 - 184
Target Start/End: Original strand, 11251655 - 11251754
Alignment:
| Q |
84 |
actcaattgcctaaagtctcctgccgctccatgtctattacagtaacaccaccttagtgggttacagattcaaagcagctgaacttaagattaaaactgt |
183 |
Q |
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| T |
11251655 |
actcaattgcctaaattctcacacctctccaagtctatgacactaacaccaccttagtggcttaca-attcaaagcagctcaacttaccattaaaactgt |
11251753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 84 - 184
Target Start/End: Original strand, 11254159 - 11254258
Alignment:
| Q |
84 |
actcaattgcctaaagtctcctgccgctccatgtctattacagtaacaccaccttagtgggttacagattcaaagcagctgaacttaagattaaaactgt |
183 |
Q |
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| T |
11254159 |
actcaattgcctaaattctcacacctctccaagtctatgacactaacaccaccttagtggcttaca-attcaaagcagctcaacttaccattaaaactgt |
11254257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 84 - 184
Target Start/End: Original strand, 11256664 - 11256763
Alignment:
| Q |
84 |
actcaattgcctaaagtctcctgccgctccatgtctattacagtaacaccaccttagtgggttacagattcaaagcagctgaacttaagattaaaactgt |
183 |
Q |
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| T |
11256664 |
actcaattgcctaaattctcacacctctccaagtctatgacactaacaccaccttagtggcttaca-attcaaagcagctcaacttaccattaaaactgt |
11256762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 84 - 184
Target Start/End: Original strand, 11259170 - 11259269
Alignment:
| Q |
84 |
actcaattgcctaaagtctcctgccgctccatgtctattacagtaacaccaccttagtgggttacagattcaaagcagctgaacttaagattaaaactgt |
183 |
Q |
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| T |
11259170 |
actcaattgcctaaattctcacacctctccaagtctatgacactaacaccaccttagtggcttaca-attcaaagcagctcaacttaccattaaaactgt |
11259268 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 84 - 184
Target Start/End: Original strand, 11294682 - 11294781
Alignment:
| Q |
84 |
actcaattgcctaaagtctcctgccgctccatgtctattacagtaacaccaccttagtgggttacagattcaaagcagctgaacttaagattaaaactgt |
183 |
Q |
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|
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| T |
11294682 |
actcaattgcctaaattctcacacctctccaagtctattacactaacaccaccttagtgacttaca-attcaaagcagctcaacttaccattaaaactgt |
11294780 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 10650939 - 10650999
Alignment:
| Q |
110 |
ctccatgtctattacagtaacaccaccttagtgggttacagattcaaagcagctgaactta |
170 |
Q |
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| T |
10650939 |
ctccaagtttattacactaacaccaccttagtggcttacagattcaaagcagctcaactta |
10650999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 93
Target Start/End: Original strand, 12089447 - 12089507
Alignment:
| Q |
33 |
caacaaaataaaattaaaagatacacgacttttcattgttgaacctccaatactcaattgc |
93 |
Q |
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| T |
12089447 |
caacataataaaattaaaagaaacacgtctttttatagttgaacctccaatatccaattgc |
12089507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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