View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0536_low_9 (Length: 251)
Name: NF0536_low_9
Description: NF0536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0536_low_9 |
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| [»] scaffold0391 (1 HSPs) |
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Alignment Details
Target: scaffold0391 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 12731 - 12952
Alignment:
| Q |
1 |
taaatcttcataccaagcagtatatacttcccaagttgatggagaaaatgagtaaactaaaagttctgataatcacaaactacggtttccatccttctga |
100 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12731 |
taaatcttcataccaagcagtatatgcttcccaagttgatggagaaaatgagtaaactaaaagttctgataatcacaaactacggtttccatccttctga |
12830 |
T |
|
| Q |
101 |
actgaataactttgagctacttgactctttacacaacctgaaacgaattagactggagcgaatttctgttccttccttcggcacattgaagagtctgaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12831 |
actgaataactttgagctacttgactctttacacaacctgaaacgaattagactggagcgaatttctgttccttccttcggcacattgaagagtctgaga |
12930 |
T |
|
| Q |
201 |
aaactatcactttacatgtgta |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
12931 |
aaactatcactttacatgtgta |
12952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 45 - 222
Target Start/End: Original strand, 33960517 - 33960694
Alignment:
| Q |
45 |
aaaatgagtaaactaaaagttctgataatcacaaactacggtttccatccttctgaactgaataactttgagctacttgactctttacacaacctgaaac |
144 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||| || | |||||||| |||||| || |
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| T |
33960517 |
aaaatgagtaaactaagagttctgataatcacaaactacggtttccatccttctaaactgaacaacattgagcttctcggttctttacagaacctggaaa |
33960616 |
T |
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| Q |
145 |
gaattagactggagcgaatttctgttccttccttcggcacattgaagagtctgagaaaactatcactttacatgtgta |
222 |
Q |
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| T |
33960617 |
gaatcagactagagcgaatttcggtcccttccttcggcacattgaagaatttgaaaaaactatctctctacatgtgta |
33960694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 45 - 222
Target Start/End: Original strand, 33975812 - 33975989
Alignment:
| Q |
45 |
aaaatgagtaaactaaaagttctgataatcacaaactacggtttccatccttctgaactgaataactttgagctacttgactctttacacaacctgaaac |
144 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||| || | |||||||| |||||| || |
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| T |
33975812 |
aaaatgagtaaactaagagttctgataatcacaaactacggtttccatccttctaaactgaacaacattgagcttctcggttctttacagaacctggaaa |
33975911 |
T |
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| Q |
145 |
gaattagactggagcgaatttctgttccttccttcggcacattgaagagtctgagaaaactatcactttacatgtgta |
222 |
Q |
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| T |
33975912 |
gaatcagactagagcgaatttcggtcccttccttcggcacattgaagaatttgaaaaaactatctctgtacatgtgta |
33975989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 33953167 - 33953388
Alignment:
| Q |
1 |
taaatcttcataccaagcagtatatacttcccaagttgatggagaaaatgagtaaactaaaagttctgataatcacaaactacggtttccatccttctga |
100 |
Q |
| |
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|||||||||||||||||||||| | | ||| ||| ||| | |||||||||||||||| ||||||||||||||||||||||| ||||||||||||| | |
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| T |
33953167 |
taaatcttcataccaagcagtactcattacccgagtggattgcaaaaatgagtaaactaagagttctgataatcacaaactacgatttccatccttctaa |
33953266 |
T |
|
| Q |
101 |
actgaataactttgagctacttgactctttacacaacctgaaacgaattagactggagcgaatttctgttccttccttcggcacattgaagagtctgaga |
200 |
Q |
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|||||| ||| ||||||| || | |||||||| |||||| || |||| ||| | ||||| |||| ||||||||||||||||||||||||| ||||| | |
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| T |
33953267 |
actgaacaacattgagcttctcggttctttacagaacctggaaagaatcagattagagcggatttacgttccttccttcggcacattgaagaatctgaaa |
33953366 |
T |
|
| Q |
201 |
aaactatcactttacatgtgta |
222 |
Q |
| |
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|||||||| || |||||||||| |
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| T |
33953367 |
aaactatctctctacatgtgta |
33953388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 45 - 222
Target Start/End: Original strand, 33992731 - 33992908
Alignment:
| Q |
45 |
aaaatgagtaaactaaaagttctgataatcacaaactacggtttccatccttctgaactgaataactttgagctacttgactctttacacaacctgaaac |
144 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| |||||||||| | ||||||||| ||||||||||| || | |||||||| |||||| || |
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| T |
33992731 |
aaaatgagtaaactaaaagttcttataatcacaaactacagtttccatccatgtgaactgaacaactttgagcttctcggttctttacagaacctggaaa |
33992830 |
T |
|
| Q |
145 |
gaattagactggagcgaatttctgttccttccttcggcacattgaagagtctgagaaaactatcactttacatgtgta |
222 |
Q |
| |
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||| ||||| |||||||||| || |||||||||||||||||||||| ||||| ||||||||| || |||||||||| |
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| T |
33992831 |
aaatcagactagagcgaattttggtcccttccttcggcacattgaagaatctgaaaaaactatctctctacatgtgta |
33992908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 33942706 - 33942927
Alignment:
| Q |
1 |
taaatcttcataccaagcagtatatacttcccaagttgatggagaaaatgagtaaactaaaagttctgataatcacaaactacggtttccatccttctga |
100 |
Q |
| |
|
|||||||||| ||||| ||||| | | |||| | |||||||||||||||| ||||| |||| ||| ||| ||| ||| | ||||| | |||||||| |
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| T |
33942706 |
taaatcttcaaaccaaacagtacacatttccagaattgatggagaaaatgaacaaacttaaagctcttatagtcataaatcatggtttacgcccttctga |
33942805 |
T |
|
| Q |
101 |
actgaataactttgagctacttgactctttacacaacctgaaacgaattagactggagcgaatttctgttccttccttcggcacattgaagagtctgaga |
200 |
Q |
| |
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|||||| || ||||||||||| ||||||| |||||| ||| |||| || || ||| | ||||||||||||||||| ||||||||||||| ||| | | |
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| T |
33942806 |
actgaacaatcttgagctacttagctctttatccaaccttaaaagaatcaggctagagaggatttctgttccttcctttggcacattgaagaatcttaaa |
33942905 |
T |
|
| Q |
201 |
aaactatcactttacatgtgta |
222 |
Q |
| |
|
||| |||| || |||||||||| |
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|
| T |
33942906 |
aaattatccctctacatgtgta |
33942927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 36 - 222
Target Start/End: Original strand, 33914024 - 33914210
Alignment:
| Q |
36 |
ttgatggagaaaatgagtaaactaaaagttctgataatcacaaactacggtttccatccttctgaactgaataactttgagctacttgactctttacaca |
135 |
Q |
| |
|
|||| |||||||||||| ||||||| || ||| ||| ||| ||| | ||||| | ||||||| |||||| || ||||||||| || ||||||| || |
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|
| T |
33914024 |
ttgaaggagaaaatgagcaaactaagagctcttatagtcataaatcatggtttacgcccttctgtactgaacaattttgagctaattagctctttatcca |
33914123 |
T |
|
| Q |
136 |
acctgaaacgaattagactggagcgaatttctgttccttccttcggcacattgaagagtctgagaaaactatcactttacatgtgta |
222 |
Q |
| |
|
|||||||| |||| || || ||||| ||||||||||||||||| |||||| |||||| ||| | |||| |||| || |||||||||| |
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|
| T |
33914124 |
acctgaaaagaatcaggctagagcggatttctgttccttcctttggcacaatgaagaatctcaaaaaattatccctctacatgtgta |
33914210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 45 - 222
Target Start/End: Complemental strand, 8277541 - 8277371
Alignment:
| Q |
45 |
aaaatgagtaaactaaaagttctgataatcacaaactacggtttccatccttctgaactgaataactttgagctacttgactctttacacaacctgaaac |
144 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||| ||| |||| ||||| ||| |
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|
| T |
8277541 |
aaaatgagtaaactaaaagttctgataatcacaaactacagtttccatccttctaaactgaataacattgagct-------tctctacagaacctaaaaa |
8277449 |
T |
|
| Q |
145 |
gaattagactggagcgaatttctgttccttccttcggcacattgaagagtctgagaaaactatcactttacatgtgta |
222 |
Q |
| |
|
|| | ||| | ||||| ||||| ||||| ||| ||| ||||||||||| |||||||||| |||| | |||||||||| |
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|
| T |
8277448 |
gagtcagattagagcggatttccgttccatccctcgacacattgaagaatctgagaaaattatctgtctacatgtgta |
8277371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 34 - 104
Target Start/End: Complemental strand, 27911046 - 27910976
Alignment:
| Q |
34 |
agttgatggagaaaatgagtaaactaaaagttctgataatcacaaactacggtttccatccttctgaactg |
104 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||| | ||| || ||||| ||||||||||||||| |
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|
| T |
27911046 |
agttgatggagaaaatgagcaaactaaaagttctcataataagaaattatggtttgcatccttctgaactg |
27910976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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