View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0538_high_4 (Length: 432)
Name: NF0538_high_4
Description: NF0538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0538_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 81 - 350
Target Start/End: Original strand, 52512414 - 52512687
Alignment:
| Q |
81 |
tatatgaatgcaattaattaagttaatgatgag----tgagtgagtaattgaaattgaattgaaactcgtatataaacatacatacataccttggaggaa |
176 |
Q |
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| T |
52512414 |
tatatgaatgcaattaattaagttaatgatgagtgagtgagtgagtaattgaaattgaattgaaactcatatataaacatacatacataccttggaggaa |
52512513 |
T |
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| Q |
177 |
gaatgatatccttgattttgaggaagagtggatttaacaataaaacaacgcgtccttcctgtttgtttgatggaagttggaggaaggcatcgaggaataa |
276 |
Q |
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| T |
52512514 |
gaatgatatccttgattttgaggaagagtggatttaacaataaaacaacgcgtccttcctgtttgtttgatggaagttggaggaaggcatcgaggaataa |
52512613 |
T |
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| Q |
277 |
cagacgcctgcaaattgcaatccattgagatatgaagaatagagtgtgttgttcttgttgttgttgatgatgat |
350 |
Q |
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| T |
52512614 |
cagacgcctgcaaattgcaatccattgagatatgaagaatagagtgtgttgttgttgatgatgatgatgatgat |
52512687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 52512346 - 52512387
Alignment:
| Q |
13 |
gagttgaacacaaacatttaagacattgacgcctcgaaacaa |
54 |
Q |
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| T |
52512346 |
gagttgaacacaaacatttaagacattgacgcctcgaaacaa |
52512387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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