View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0538_low_1 (Length: 814)
Name: NF0538_low_1
Description: NF0538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0538_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 589; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 589; E-Value: 0
Query Start/End: Original strand, 8 - 719
Target Start/End: Complemental strand, 40049108 - 40048379
Alignment:
| Q |
8 |
cgaataatatcacaagccaatttttgtccnnnnnnngtttatcttacaggtcagttatacattttctataacctctatactgttgattccaactacattt |
107 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40049108 |
cgaataatatcacaagccaatttttgtccaaaaaaagtttatcttacaggtcagttatacattttctataacctctatactgttgattccaactacattt |
40049009 |
T |
|
| Q |
108 |
attgcaatatgatttgagaaacaataatattaatctcatttcaaagttaacggctcaccacataaaaacttcacacaataattcaagtaaccaaaagaga |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
40049008 |
attgcaatatgatttgagaaacaataatattaatctcatttcaaagttaacgggtcaccacataaaaacttcacacgataattcaagtaaccaaaagaga |
40048909 |
T |
|
| Q |
208 |
tgcaatgccaataataataa------------gataaaatatccttattcaccatgacagattattgattccaccaaaatcacaactatagaactataac |
295 |
Q |
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|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40048908 |
tgcaataccaataataataataataataataagataaaatatccttattcaccatgacagattattgattccaccaaaatcacaactatagaactataac |
40048809 |
T |
|
| Q |
296 |
attacacctacccatcatttcattggtctctatataaaaccacctctcattactctccaatcaacacatccaacatacaaattaacaaaaaatccaatca |
395 |
Q |
| |
|
||||||||||||||||||||| |||| ||| ||||||| ||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40048808 |
attacacctacccatcatttccttggcctcaatataaatccacctctccttgccatccaatcaacacatccaacatacaaattaacaaaaaatccaatca |
40048709 |
T |
|
| Q |
396 |
tttacgttcctccacaatcttcaatcatcaagccaaatatgaatcaaattatcttttccttctcactctttctactcatgttctcctcattgtattctcc |
495 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40048708 |
tttacattcctccacaatcttcaatcatcaagccaaatatgaatcaaattatcttttccttctcactctttctactcatgttctcctcattgtattctcc |
40048609 |
T |
|
| Q |
496 |
caacacagcagcaacagcgacagcaacagcacc------agcagcgtcaccgaaacatgccccggcaccaaaagcagcgtcaccaacatcgacaaaacca |
589 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40048608 |
caacatagcagcaacagcgacagcaacagcaccagcacaagcagcatcaccgaaacatgccccggcaccaaaagcagcgtcaccaacatcgacaaaacca |
40048509 |
T |
|
| Q |
590 |
ttagtcccgacattaccagacacctcagattccaccccggacgacataacaaaaatcctcaaaaaggcgaaaacattcacaatcctaacccgtctcctaa |
689 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40048508 |
ttagtcccgacattaccagacacctcagattccaccccggacgacataacaaaaatcctcaaaaaggcgaaaacattcacaatcctaacccgtctcctaa |
40048409 |
T |
|
| Q |
690 |
gaacaacacaaatcgtggacaacctaaact |
719 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
40048408 |
gaacaacacaaatcgtggacaacctaaact |
40048379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 629 - 703
Target Start/End: Original strand, 22056082 - 22056156
Alignment:
| Q |
629 |
gacgacataacaaaaatcctcaaaaaggcgaaaacattcacaatcctaacccgtctcctaagaacaacacaaatc |
703 |
Q |
| |
|
|||||||| |||| |||||| |||||||||||||||||| | |||||| ||||||||||| ||||||| ||||| |
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|
| T |
22056082 |
gacgacatcacaacaatccttaaaaaggcgaaaacattctccgtcctaatccgtctcctaaaaacaacagaaatc |
22056156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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