View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0538_low_10 (Length: 483)
Name: NF0538_low_10
Description: NF0538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0538_low_10 |
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| [»] scaffold0041 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 49 - 470
Target Start/End: Complemental strand, 28269704 - 28269287
Alignment:
| Q |
49 |
caaattgcatgcaggtggttatgggactctagaggagcttcttgaagtcataacctgggctcaacttgggattcacgacaaaccggtaattgacttgtac |
148 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28269704 |
caaattgcatgcaggtggttatgggactctagaggagcttcttgaagtcataacctgggctcaacttgggattcacgacaaaccggtaattgacttgtac |
28269605 |
T |
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| Q |
149 |
tattttgttaaggaacctaaatattattaagtaattcacgttgtgctgttactagtttaactagatttgacattccacaactcgcaggtgggattagtaa |
248 |
Q |
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| T |
28269604 |
tattttgttaaggaacctaaatattattaagtaattcacgttgtgctattactagtttaactagatttgacattccacaactcgcaggtgggattagtaa |
28269505 |
T |
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| Q |
249 |
atgttgatggatactttaattcgttactttcattcatcgacaaagctgtggaagagggatttatcagtccaaatgcgcgccacataattgtatcagcacc |
348 |
Q |
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| T |
28269504 |
atgttgatggatactttaattcgttactttcattcatcgacaaagctgtggaagagggatttatcagtccaaatgcgcgccacataattgtatcagcacc |
28269405 |
T |
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| Q |
349 |
tacatcaaaagagttagtgaagaaattggaggtaaaatcaaagtgtttgtatatgcaatcacattttcttctgcagaattaagaaacaaattatttatag |
448 |
Q |
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| T |
28269404 |
tacatcaaaagagttggtgaagaaattggaggtaaaatcaaag----tgtatatgcaatcacattttcttctgcagaattaagaaacaaattatttatag |
28269309 |
T |
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| Q |
449 |
ttattatgtttgattcatctca |
470 |
Q |
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| T |
28269308 |
ttattatgtttgattcatctca |
28269287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 234 - 383
Target Start/End: Original strand, 79255 - 79404
Alignment:
| Q |
234 |
aggtgggattagtaaatgttgatggatactttaattcgttactttcattcatcgacaaagctgtggaagagggatttatcagtccaaatgcgcgccacat |
333 |
Q |
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|||| ||||||||||||||||||||||||||||| || || | |||||||| ||||||||||||||||| || ||||| ||||||||||| || ||||| |
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| T |
79255 |
aggttggattagtaaatgttgatggatactttaactccttgttgtcattcattgacaaagctgtggaagaagggtttattagtccaaatgctcgtcacat |
79354 |
T |
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| Q |
334 |
aattgtatcagcacctacatcaaaagagttagtgaagaaattggaggtaa |
383 |
Q |
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| T |
79355 |
aattgtatcagcaccaactgcaaaagagttggtcaagaaattggaggtaa |
79404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 57 - 138
Target Start/End: Original strand, 79078 - 79159
Alignment:
| Q |
57 |
atgcaggtggttatgggactctagaggagcttcttgaagtcataacctgggctcaacttgggattcacgacaaaccggtaat |
138 |
Q |
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| T |
79078 |
atgcagggggatatggaactctggaggaacttcttgaagtcataacatgggctcaacttggaattcatgacaagccggtaat |
79159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 234 - 383
Target Start/End: Complemental strand, 40887029 - 40886880
Alignment:
| Q |
234 |
aggtgggattagtaaatgttgatggatactttaattcgttactttcattcatcgacaaagctgtggaagagggatttatcagtccaaatgcgcgccacat |
333 |
Q |
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| T |
40887029 |
aggttggattagtaaatgttgatggatactttaactccttgttgtcattcattgacaaagctgtggaagaagggtttattagtccaaatgctcgtcacat |
40886930 |
T |
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| Q |
334 |
aattgtatcagcacctacatcaaaagagttagtgaagaaattggaggtaa |
383 |
Q |
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| T |
40886929 |
aattgtatcagcaccaactgcaaaagagttggtcaagaaattggaggtaa |
40886880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 57 - 138
Target Start/End: Complemental strand, 40887206 - 40887125
Alignment:
| Q |
57 |
atgcaggtggttatgggactctagaggagcttcttgaagtcataacctgggctcaacttgggattcacgacaaaccggtaat |
138 |
Q |
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| T |
40887206 |
atgcagggggatatggaactctggaggaacttcttgaagtcataacatgggctcaacttggaattcatgacaagccggtaat |
40887125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 54 - 137
Target Start/End: Complemental strand, 40461782 - 40461699
Alignment:
| Q |
54 |
tgcatgcaggtggttatgggactctagaggagcttcttgaagtcataacctgggctcaacttgggattcacgacaaaccggtaa |
137 |
Q |
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|||||| |||||| |||||||| || |||||||| ||||| || ||||| |||||||||||||| || || || |||||||||| |
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| T |
40461782 |
tgcatgaaggtgggtatgggacacttgaggagctccttgaggtgataacatgggctcaacttggcatccatgataaaccggtaa |
40461699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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