View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0538_low_11 (Length: 464)

Name: NF0538_low_11
Description: NF0538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0538_low_11
NF0538_low_11
[»] chr7 (3 HSPs)
chr7 (95-449)||(28105860-28106214)
chr7 (99-302)||(44002530-44002742)
chr7 (173-290)||(3799400-3799518)
[»] chr8 (3 HSPs)
chr8 (99-302)||(12268532-12268738)
chr8 (202-302)||(7754857-7754957)
chr8 (155-234)||(37046354-37046434)
[»] chr5 (3 HSPs)
chr5 (100-302)||(17463096-17463298)
chr5 (100-269)||(13288694-13288864)
chr5 (100-233)||(4177451-4177584)
[»] chr1 (4 HSPs)
chr1 (99-303)||(50371384-50371590)
chr1 (100-208)||(39080326-39080434)
chr1 (222-302)||(8115603-8115683)
chr1 (341-388)||(8115718-8115765)
[»] chr2 (2 HSPs)
chr2 (95-302)||(26261521-26261735)
chr2 (96-302)||(24233422-24233639)
[»] chr4 (4 HSPs)
chr4 (99-234)||(10387105-10387240)
chr4 (122-302)||(9925371-9925558)
chr4 (341-389)||(9925591-9925639)
chr4 (342-389)||(10390083-10390130)
[»] scaffold0606 (1 HSPs)
scaffold0606 (95-209)||(8124-8238)


Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 95 - 449
Target Start/End: Original strand, 28105860 - 28106214
Alignment:
Q  95 atatgttgcttaatgcttattaataattactttttaaaatttcagagtataattcttaattttgttgaatgttgcaaatatatggttttaatatatgtcg 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  28105860 atatgttgcttaatgcttattaataattactttttaaaatttcagtgtataattcctaattttgttgaatgttgcaaatatatggttctaatatatgtcg 28105959  T
Q  195 aatgtcgaaatttttgttatatgttgaatgttgaaaaatacaattgctaattttgttatacgatggaagttgaatatcgacaaattttggtatatattgc 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  28105960 aatgtcgaaatttttgttatatgttgaatgttgaaaaatacaattgatgattttgttatacaatggaagttgaatatcgacaaattttggtatatattgc 28106059  T
Q  295 taatatataaatataactcctaattttcaggttctacannnnnnnncagtcttcctctatgtctcctaatttgcttcttaggattagaaagttttnnnnn 394  Q
    ||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||| |||||||||||||||||||||||||         
T  28106060 taatatataaatataactcctaattttcaggttctacatttttaa--agtcttcctctatgtctcctaaattgcttcttaggattagaaagtttt-aaaa 28106156  T
Q  395 nnnttacatttttattttaccttgagagttgag---tctatttcataggaaatgtctt 449  Q
       |||||||||||||||||||||||||| |||   |||||||||||| |||||||||    
T  28106157 aaattacatttttattttaccttgagagtcgagtcttctatttcatagaaaatgtctt 28106214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 99 - 302
Target Start/End: Complemental strand, 44002742 - 44002530
Alignment:
Q  99 gttgcttaatgcttattaataattactttttaaaatttcagagtataattcttaattttgttgaatgttgcaaatatatggttttaatat-------atg 191  Q
    |||||||||||||||||| |||||||||||||||||||||  ||||||||  ||||||||||||||||||||||||||||||| ||||||       |||    
T  44002742 gttgcttaatgcttattagtaattactttttaaaatttcaatgtataattgctaattttgttgaatgttgcaaatatatggttctaatatatgttgaatg 44002643  T
Q  192 tcgaatgtcgaaatttttgttatatgttgaatgttgaaaaatacaattgctaattttgt--tatacgatggaagttgaatatcgacaaattttggtatat 289  Q
    | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||| | |||| ||||||| | ||||| |||||||||||    
T  44002642 ttgaatgtcgaaatttttgttatatgttgaatgttgaaaaatataattgctaattttgttatatatgttggacgttgaatgttgacaagttttggtatat 44002543  T
Q  290 attgctaatatat 302  Q
     ||||||||||||    
T  44002542 gttgctaatatat 44002530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 173 - 290
Target Start/End: Complemental strand, 3799518 - 3799400
Alignment:
Q  173 tatatggttttaatatatgtcgaatgtcgaaa-tttttgttatatgttgaatgttgaaaaatacaattgctaattttgttatacgatggaagttgaatat 271  Q
    |||||| |||| |||||||| ||||||||||| |||||||||||||||| ||||||||| ||| |||||||| |||||||||| | ||||  |||||| |    
T  3799518 tatatgattttgatatatgttgaatgtcgaaaatttttgttatatgttggatgttgaaatatataattgctatttttgttatatgttggacattgaatgt 3799419  T
Q  272 cgacaaattttggtatata 290  Q
     ||||||||||||||||||    
T  3799418 tgacaaattttggtatata 3799400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 121; Significance: 8e-62; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 99 - 302
Target Start/End: Complemental strand, 12268738 - 12268532
Alignment:
Q  99 gttgcttaatgcttattaataattactttttaaaatttcagagtataattcttaattttgttgaatgttgcaaatatatggttttaata---tatgtcga 195  Q
    ||||||||| || ||||| |||||||||||||||||||||| ||||||||  |||||||||| ||||||| |||||||| ||| |||||   ||||| ||    
T  12268738 gttgcttaaggcgtattagtaattactttttaaaatttcagtgtataattgctaattttgttaaatgttgtaaatatatagttctaataatatatgttga 12268639  T
Q  196 atgtcgaaatttttgttatatgttgaatgttgaaaaatacaattgctaattttgttatacgatggaagttgaatatcgacaaattttggtatatattgct 295  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||| ||||||| | ||||||||||||||||| |||||    
T  12268638 atgtcgaaatttttgttatatgttgaaggttgaaaaatataattgctaattttgttatatgatggacgttgaatgttgacaaattttggtatatgttgct 12268539  T
Q  296 aatatat 302  Q
    |||||||    
T  12268538 aatatat 12268532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 202 - 302
Target Start/End: Complemental strand, 7754957 - 7754857
Alignment:
Q  202 aaatttttgttatatgttgaatgttgaaaaatacaattgctaattttgttatacgatggaagttgaatatcgacaaattttggtatatattgctaatata 301  Q
    |||||||||||||||||||||  |||||||||| ||||||||||||||||| |   |||| ||||||| | ||||||||||||||||| |||||||||||    
T  7754957 aaatttttgttatatgttgaacattgaaaaatataattgctaattttgttacaaagtggacgttgaatgttgacaaattttggtatatgttgctaatata 7754858  T
Q  302 t 302  Q
    |    
T  7754857 t 7754857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 155 - 234
Target Start/End: Original strand, 37046354 - 37046434
Alignment:
Q  155 tttgttgaatgttgcaaatatatggttttaatatatgtcgaatgtcgaaatttttgttatatgtt-gaatgttgaaaaata 234  Q
    |||||||||| ||| |||||||||||| |||| ||||| ||||||||||| |||||||||||||| ||||||| |||||||    
T  37046354 tttgttgaatattgtaaatatatggttctaatgtatgttgaatgtcgaaaattttgttatatgttagaatgttcaaaaata 37046434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 115; Significance: 3e-58; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 100 - 302
Target Start/End: Original strand, 17463096 - 17463298
Alignment:
Q  100 ttgcttaatgcttattaataattactttttaaaatttcagagtataattcttaattttgttgaatgttgcaaatatatggttttaatatatgtcgaatgt 199  Q
    ||||||||||||||||| |||||||||||||||||||||| |||| |||  |||||||||||||||||||||||||||  || |||||||||| ||||||    
T  17463096 ttgcttaatgcttattagtaattactttttaaaatttcagtgtatcattgctaattttgttgaatgttgcaaatatattattctaatatatgttgaatgt 17463195  T
Q  200 cgaaatttttgttatatgttgaatgttgaaaaatacaattgctaattttgttatacgatggaagttgaatatcgacaaattttggtatatattgctaata 299  Q
    | ||||     |||||||||||||||||||||||| ||||||||||||||||||| | |||  ||||||| | |||||||||||||||||||||||||||    
T  17463196 caaaataaaatttatatgttgaatgttgaaaaatataattgctaattttgttatatgttgggtgttgaatgttgacaaattttggtatatattgctaata 17463295  T
Q  300 tat 302  Q
    |||    
T  17463296 tat 17463298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 100 - 269
Target Start/End: Original strand, 13288694 - 13288864
Alignment:
Q  100 ttgcttaatgcttattaataattactttt-taaaatttcagagtataattcttaattttgttgaatgttgcaaatatatggttttaatatatgtcgaatg 198  Q
    ||||||||||||||||| ||||||||||| |||||||| || ||||||||  |||||||||| |||||||||||||||||||| |||||||||| |||||    
T  13288694 ttgcttaatgcttattagtaattacttttttaaaattttagggtataattgataattttgttaaatgttgcaaatatatggttctaatatatgttgaatg 13288793  T
Q  199 tcgaaatttttgttatatgttgaatgttgaaaaatacaattgctaattttgttatacgatggaagttgaat 269  Q
     |||||||||| |||||||||||| || |||||||| |||||||||||||| |||| |||||| |||||||    
T  13288794 ccgaaatttttattatatgttgaaggtcgaaaaatataattgctaattttgctatatgatggacgttgaat 13288864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 100 - 233
Target Start/End: Original strand, 4177451 - 4177584
Alignment:
Q  100 ttgcttaatgcttattaataattactttttaaaatttcagagtataattcttaattttgttgaatgttgcaaatatatggttttaatatatgtcgaatgt 199  Q
    |||||||||| |||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| || ||||||||||  |||||    
T  4177451 ttgcttaatgattattagtaattactttttaaaatttcagtgtataatttttaattttgttgaatgttgcaaatatatgtttctaatatatgttaaatgt 4177550  T
Q  200 cgaaatttttgttatatgttgaatgttgaaaaat 233  Q
    | ||| ||||||||||||||||||||||| ||||    
T  4177551 caaaaattttgttatatgttgaatgttgacaaat 4177584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 108; Significance: 5e-54; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 99 - 303
Target Start/End: Original strand, 50371384 - 50371590
Alignment:
Q  99 gttgcttaatgcttattaataattactttttaaaatttcagagtataattcttaattttgttgaatgttgcaaatatatggttttaatatatgtcgaatg 198  Q
    |||||||||||||||| | |||||||| || |||||||||  |||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||    
T  50371384 gttgcttaatgcttatcagtaattactcttcaaaatttcaatgtataattgttaattttgttgaatgttgcaaatatatggttctaatatatgttgaatg 50371483  T
Q  199 tcgaa--atttttgttatatgttgaatgttgaaaaatacaattgctaattttgttatacgatggaagttgaatatcgacaaattttggtatatattgcta 296  Q
    | |||   |||||||||||||||||||||||||||||| ||||||||||||||||||| | |||| | ||||| | || |||||||||||| | || |||    
T  50371484 ttgaattttttttgttatatgttgaatgttgaaaaatataattgctaattttgttatatgttggatgctgaatgttgataaattttggtatttgttacta 50371583  T
Q  297 atatata 303  Q
    |||||||    
T  50371584 atatata 50371590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 100 - 208
Target Start/End: Complemental strand, 39080434 - 39080326
Alignment:
Q  100 ttgcttaatgcttattaataattactttttaaaatttcagagtataattcttaattttgttgaatgttgcaaatatatggttttaatatatgtcgaatgt 199  Q
    ||||||||||||||||  ||||||| |||||||||||||| ||||||||  ||||||| ||||||||| ||||||||||||| |||||||||| ||||||    
T  39080434 ttgcttaatgcttatttgtaattacgttttaaaatttcagtgtataattgctaattttattgaatgttacaaatatatggttctaatatatgttgaatgt 39080335  T
Q  200 cgaaatttt 208  Q
    |||| ||||    
T  39080334 cgaagtttt 39080326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 222 - 302
Target Start/End: Original strand, 8115603 - 8115683
Alignment:
Q  222 atgttgaaaaatacaattgctaattttgttatacgatggaagttgaatatcgacaaattttggtatatattgctaatatat 302  Q
    |||||| |||||| ||||||||||||||||||| | |||| ||||||| | ||||||||||||||||| ||||||||||||    
T  8115603 atgttggaaaatataattgctaattttgttatatgttggacgttgaatgttgacaaattttggtatatgttgctaatatat 8115683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 341 - 388
Target Start/End: Original strand, 8115718 - 8115765
Alignment:
Q  341 cagtcttcctctatgtctcctaatttgcttcttaggattagaaagttt 388  Q
    ||||||||||||||| || |||| |||||||||| |||||||||||||    
T  8115718 cagtcttcctctatgccttctaaattgcttcttacgattagaaagttt 8115765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 105; Significance: 3e-52; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 95 - 302
Target Start/End: Original strand, 26261521 - 26261735
Alignment:
Q  95 atatgttgcttaatgcttattaataattactttttaaaatttcagagtataattcttaattttgttgaatgttgcaaatatatggttttaatat------ 188  Q
    |||||||||||||||||||||| |||||||||||||||||||||| ||||||||  || ||||||| ||||||||||||||||| || ||||||          
T  26261521 atatgttgcttaatgcttattagtaattactttttaaaatttcagtgtataattgctagttttgttaaatgttgcaaatatatgattctaatatatgttg 26261620  T
Q  189 -atgtcgaatgtcgaaatttttgttatatgttgaatgttgaaaaatacaattgctaattttgttatacgatggaagttgaatatcgacaaattttggtat 287  Q
     |||| |||||||||||||| |||||||||||||| ||||||||||| ||||| ||||||| ||||| | |||| ||||||| | |||||||||||||||    
T  26261621 gatgttgaatgtcgaaatttatgttatatgttgaaagttgaaaaatataattggtaattttcttatatggtggacgttgaatgttgacaaattttggtat 26261720  T
Q  288 atattgctaatatat 302  Q
    || |||| |||||||    
T  26261721 atgttgccaatatat 26261735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 96 - 302
Target Start/End: Complemental strand, 24233639 - 24233422
Alignment:
Q  96 tatgttgcttaatgcttattaataattactttttaaaatttcagagtataattcttaattttgttgaatgttgcaaatatatggttttaatat------- 188  Q
    ||||| || ||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||| || |||||||| ||| ||||||           
T  24233639 tatgtggcataatgcttattaataattactttttaaaatttcagtgtataattgctaattttgttgaatgatgtaaatatatagttctaatatatgttga 24233540  T
Q  189 atgtcgaatgtcgaaatttttgttatatgttgaatgttgaaaaatacaattgctaat----tttgttatacgatggaagttgaatatcgacaaattttgg 284  Q
    |||| ||||||| ||| |||||||||||||||| || ||||||||| ||||||||||    |||||| || | |||| | ||||| |  |||||||||||    
T  24233539 atgttgaatgtcaaaaattttgttatatgttgattgctgaaaaatataattgctaatcttgtttgttgtatgttggacgatgaatgtttacaaattttgg 24233440  T
Q  285 tatatattgctaatatat 302  Q
    ||||| ||||||||||||    
T  24233439 tatatgttgctaatatat 24233422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 99 - 234
Target Start/End: Original strand, 10387105 - 10387240
Alignment:
Q  99 gttgcttaatgcttattaataattactttttaaaatttcagagtataattcttaattttgttgaatgttgcaaatatatggttttaatatatgtcgaatg 198  Q
    |||||||||||||||| |||||||||||||||||||||||   |||||||  |||||||||||||||||| |||||||| ||| ||||||  || |||||    
T  10387105 gttgcttaatgcttatcaataattactttttaaaatttcaatatataattgctaattttgttgaatgttggaaatatatagttataatattcgttgaatg 10387204  T
Q  199 tcgaaatttttgttatatgttgaatgttgaaaaata 234  Q
    || ||| |||||||||||||||||||||||||||||    
T  10387205 tcaaaaattttgttatatgttgaatgttgaaaaata 10387240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 122 - 302
Target Start/End: Original strand, 9925371 - 9925558
Alignment:
Q  122 tactttttaaaatttcagagtataattcttaattttgttgaatgttgcaaatatatggttttaatata-------tgtcgaatgtcgaaatttttgttat 214  Q
    ||||||| |||||||| | ||||||||  ||||||||||||||||| ||||||||||||| |||||||       ||| ||||||| || |||| |||||    
T  9925371 tacttttaaaaatttctgtgtataattgctaattttgttgaatgtttcaaatatatggttctaatataagttgaatgttgaatgtccaatttttcgttat 9925470  T
Q  215 atgttgaatgttgaaaaatacaattgctaattttgttatacgatggaagttgaatatcgacaaattttggtatatattgctaatatat 302  Q
    | |||||||||||||||||| ||||| ||||||||||||| | || | ||||||| | ||||||||| ||||||| | | ||||||||    
T  9925471 acgttgaatgttgaaaaatataattgttaattttgttatatgttgaacgttgaatgttgacaaatttaggtatatgtcgttaatatat 9925558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 341 - 389
Target Start/End: Original strand, 9925591 - 9925639
Alignment:
Q  341 cagtcttcctctatgtctcctaatttgcttcttaggattagaaagtttt 389  Q
    ||||||||||||||  ||||||| |||| ||||||||||||||||||||    
T  9925591 cagtcttcctctatacctcctaaattgcgtcttaggattagaaagtttt 9925639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 389
Target Start/End: Original strand, 10390083 - 10390130
Alignment:
Q  342 agtcttcctctatgtctcctaatttgcttcttaggattagaaagtttt 389  Q
    |||||||||||||| ||||||| |||| ||||||||||||||| ||||    
T  10390083 agtcttcctctatgcctcctaaattgcctcttaggattagaaattttt 10390130  T

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Target: scaffold0606 (Bit Score: 79; Significance: 9e-37; HSPs: 1)
Name: scaffold0606
Description:

Target: scaffold0606; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 95 - 209
Target Start/End: Complemental strand, 8238 - 8124
Alignment:
Q  95 atatgttgcttaatgcttattaataattactttttaaaatttcagagtataattcttaattttgttgaatgttgcaaatatatggttttaatatatgtcg 194  Q
    |||||||  ||||||||||||| ||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||| |||| ||||| |    
T  8238 atatgtttattaatgcttattagtaattactttttaaaattttagtgtataattgttaattttgttgaatgttgcaaatatatggttctaatgtatgttg 8139  T
Q  195 aatgtcgaaattttt 209  Q
    |||||||||||||||    
T  8138 aatgtcgaaattttt 8124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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