View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0538_low_12 (Length: 445)
Name: NF0538_low_12
Description: NF0538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0538_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 11 - 416
Target Start/End: Complemental strand, 34430424 - 34430019
Alignment:
| Q |
11 |
cagagataacagacagaaattcttcattcaagaatcgctctggtgaaacaaaaagcacctgtatgaattataattgcaatcagtatctttcacgtgagag |
110 |
Q |
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| T |
34430424 |
cagagataacagacagaaattcttcattcaagaatcgctctggtgaaacaaaaagcacctgtatgaattataattgcaatcagtatctttcacgtgagag |
34430325 |
T |
|
| Q |
111 |
ttctaacatcatcgatacagtaaattaacttgcaattcaaatgtgatatgtgaaaatggcttataaataatcaacattcacatgcatgcaatcaatcagc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34430324 |
ttctaacatcatcgatacagtaaattaacttgcaattcaaatgtgatatgtgaaaatggcttataaataatcaacattcacatgcatgcaatcaatcagc |
34430225 |
T |
|
| Q |
211 |
aagattgctacatatatctacaaaagaagatccaagccaaagttgaactcagttgtcgaaattctcacctttattgtgccttgacgaagctggttaagcg |
310 |
Q |
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| T |
34430224 |
aagattgctacatatatctacaaaagaagatccaagccaaagttgaactcagttgtcgaaattctcacctttattgtgccttgacgaagctggttaagcg |
34430125 |
T |
|
| Q |
311 |
tttcagaggattcttcaaatgtctaatacaataaacaaaaaatgagaaagatttgtaactaaatgatctatcattagaaataattcacataaaagaccgt |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
34430124 |
tttcagaggattcttcaaatgtctaatacaataaacaaaaaatgagaaagaattgtaactaaatgatctatcattagacataattcacataaaagaccgt |
34430025 |
T |
|
| Q |
411 |
aaaatc |
416 |
Q |
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|||||| |
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| T |
34430024 |
aaaatc |
34430019 |
T |
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