View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0538_low_14 (Length: 430)

Name: NF0538_low_14
Description: NF0538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0538_low_14
NF0538_low_14
[»] chr2 (4 HSPs)
chr2 (34-200)||(12793685-12793850)
chr2 (245-324)||(7962256-7962335)
chr2 (249-325)||(12793899-12793975)
chr2 (29-95)||(22885082-22885148)
[»] chr3 (3 HSPs)
chr3 (249-324)||(33161716-33161791)
chr3 (252-324)||(41876080-41876152)
chr3 (30-95)||(1652836-1652901)
[»] chr5 (7 HSPs)
chr5 (249-323)||(6784681-6784755)
chr5 (251-323)||(6775579-6775651)
chr5 (251-323)||(17491346-17491418)
chr5 (253-324)||(34367076-34367147)
chr5 (251-323)||(18915713-18915785)
chr5 (252-323)||(25345980-25346051)
chr5 (29-93)||(31721745-31721809)
[»] chr1 (4 HSPs)
chr1 (251-324)||(29579116-29579189)
chr1 (34-102)||(4651838-4651906)
chr1 (34-80)||(2988073-2988119)
chr1 (29-95)||(19598702-19598768)
[»] chr4 (6 HSPs)
chr4 (251-323)||(32116302-32116374)
chr4 (243-323)||(41128265-41128346)
chr4 (252-323)||(55048404-55048475)
chr4 (35-95)||(35800555-35800615)
chr4 (34-95)||(12296241-12296302)
chr4 (29-95)||(43374043-43374109)
[»] chr8 (4 HSPs)
chr8 (252-323)||(33863577-33863648)
chr8 (34-97)||(35062521-35062584)
chr8 (34-80)||(41791218-41791264)
chr8 (29-88)||(17720655-17720714)
[»] chr7 (2 HSPs)
chr7 (34-102)||(38485614-38485682)
chr7 (29-80)||(46133225-46133276)
[»] chr6 (1 HSPs)
chr6 (29-93)||(26215968-26216032)


Alignment Details
Target: chr2 (Bit Score: 119; Significance: 1e-60; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 34 - 200
Target Start/End: Original strand, 12793685 - 12793850
Alignment:
Q  34 cttccaccaccgcgcaacctccagtccatcgaaggaacaccaaaaaaccccaaaagcaaactagcaccaatatagtgtgtttgagtcaaaattagtttga 133  Q
    ||||||||||||| |||||||| ||||| ||||||||||||| |||| ||||||| |||||||||||||| ||| |||||||||||||| | ||||||||    
T  12793685 cttccaccaccgcacaacctccggtcca-cgaaggaacaccataaaagcccaaaaccaaactagcaccaacatactgtgtttgagtcaatagtagtttga 12793783  T
Q  134 gaatgcaatcaataccatcgtagttttgagaatggcctcgtatttgaactgaaatacaatagtcatg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  12793784 gaatgcaatcaataccatcgtagttttgagaatggcctcgtatttgaattgaaatacaatagtcatg 12793850  T

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Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 245 - 324
Target Start/End: Complemental strand, 7962335 - 7962256
Alignment:
Q  245 catcaatggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttcat 324  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7962335 catcaatggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttcat 7962256  T

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Target: chr2; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 249 - 325
Target Start/End: Original strand, 12793899 - 12793975
Alignment:
Q  249 aatggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttcatt 325  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12793899 aatggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttcatt 12793975  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 95
Target Start/End: Original strand, 22885082 - 22885148
Alignment:
Q  29 atcaacttccaccaccgcgcaacctccagtccatcgaaggaacaccaaaaaaccccaaaagcaaact 95  Q
    |||||||||||||||| | |||||||  ||||| |||| ||||||||||| | ||||||| ||||||    
T  22885082 atcaacttccaccacctctcaacctctggtccaccgaaagaacaccaaaacaacccaaaaccaaact 22885148  T

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Target: chr3 (Bit Score: 76; Significance: 5e-35; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 249 - 324
Target Start/End: Original strand, 33161716 - 33161791
Alignment:
Q  249 aatggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttcat 324  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33161716 aatggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttcat 33161791  T

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Target: chr3; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 252 - 324
Target Start/End: Complemental strand, 41876152 - 41876080
Alignment:
Q  252 ggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttcat 324  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  41876152 ggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcatgtcaggttcat 41876080  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 95
Target Start/End: Original strand, 1652836 - 1652901
Alignment:
Q  30 tcaacttccaccaccgcgcaacctccagtccatcgaaggaacaccaaaaaaccccaaaagcaaact 95  Q
    ||||||||| |||||||  ||||||| ||||| |||| ||||||||||||| ||||||| ||||||    
T  1652836 tcaacttccgccaccgcttaacctccggtccaccgaaagaacaccaaaaaagcccaaaaccaaact 1652901  T

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Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 249 - 323
Target Start/End: Complemental strand, 6784755 - 6784681
Alignment:
Q  249 aatggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 323  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6784755 aatggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 6784681  T

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Target: chr5; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 251 - 323
Target Start/End: Complemental strand, 6775651 - 6775579
Alignment:
Q  251 tggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 323  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6775651 tggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 6775579  T

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Target: chr5; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 251 - 323
Target Start/End: Original strand, 17491346 - 17491418
Alignment:
Q  251 tggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 323  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17491346 tggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 17491418  T

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Target: chr5; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 253 - 324
Target Start/End: Complemental strand, 34367147 - 34367076
Alignment:
Q  253 gatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttcat 324  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  34367147 gatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacatcaggttcat 34367076  T

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Target: chr5; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 251 - 323
Target Start/End: Original strand, 18915713 - 18915785
Alignment:
Q  251 tggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 323  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  18915713 tggatccgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcgggttca 18915785  T

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Target: chr5; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 252 - 323
Target Start/End: Original strand, 25345980 - 25346051
Alignment:
Q  252 ggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 323  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||| ||||||    
T  25345980 ggatccgtggcgcaatggtagcgcgtctgactccagatcaaaaggttgcgtgtttgattctcgtcgggttca 25346051  T

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Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 31721809 - 31721745
Alignment:
Q  29 atcaacttccaccaccgcgcaacctccagtccatcgaaggaacaccaaaaaaccccaaaagcaaa 93  Q
    ||||||||||||||||||||||| ||| |||||  ||||||||||||||| | ||||||| ||||    
T  31721809 atcaacttccaccaccgcgcaacatccggtccactgaaggaacaccaaaacaacccaaaaccaaa 31721745  T

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Target: chr1 (Bit Score: 74; Significance: 8e-34; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 251 - 324
Target Start/End: Complemental strand, 29579189 - 29579116
Alignment:
Q  251 tggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttcat 324  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29579189 tggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttcat 29579116  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 4651906 - 4651838
Alignment:
Q  34 cttccaccaccgcgcaacctccagtccatcgaaggaacaccaaaaaaccccaaaagcaaactagcacca 102  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||| ||||||| |||||||| ||||    
T  4651906 cttccaccaccgcgcaacctccggtccaccgaaggaacaccaaaaaagcccaaaaccaaactagaacca 4651838  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 2988073 - 2988119
Alignment:
Q  34 cttccaccaccgcgcaacctccagtccatcgaaggaacaccaaaaaa 80  Q
    ||||||||||||| |||||||| ||| ||||||||||||||||||||    
T  2988073 cttccaccaccgcacaacctccggtctatcgaaggaacaccaaaaaa 2988119  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 95
Target Start/End: Complemental strand, 19598768 - 19598702
Alignment:
Q  29 atcaacttccaccaccgcgcaacctccagtccatcgaaggaacaccaaaaaaccccaaaagcaaact 95  Q
    |||||||||||||||| | |||||||| | ||| |||| |||||||| |||| ||||||| ||||||    
T  19598768 atcaacttccaccacctcacaacctccggaccaccgaaagaacaccataaaaacccaaaatcaaact 19598702  T

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Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 251 - 323
Target Start/End: Original strand, 32116302 - 32116374
Alignment:
Q  251 tggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 323  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32116302 tggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 32116374  T

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Target: chr4; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 243 - 323
Target Start/End: Complemental strand, 41128346 - 41128265
Alignment:
Q  243 aacatcaat-ggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 323  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  41128346 aacatcaatcggatccgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcgggttca 41128265  T

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Target: chr4; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 252 - 323
Target Start/End: Complemental strand, 55048475 - 55048404
Alignment:
Q  252 ggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 323  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  55048475 ggatccgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcgggttca 55048404  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 35 - 95
Target Start/End: Complemental strand, 35800615 - 35800555
Alignment:
Q  35 ttccaccaccgcgcaacctccagtccatcgaaggaacaccaaaaaaccccaaaagcaaact 95  Q
    ||||||||||||| ||||||| ||||| |||| ||||||||||||| ||||||| ||||||    
T  35800615 ttccaccaccgcgaaacctccggtccaccgaaagaacaccaaaaaagcccaaaaccaaact 35800555  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 95
Target Start/End: Complemental strand, 12296302 - 12296241
Alignment:
Q  34 cttccaccaccgcgcaacctccagtccatcgaaggaacaccaaaaaaccccaaaagcaaact 95  Q
    ||||||||||| | |||||||| ||||| |||| ||||||||||||| ||||||| ||||||    
T  12296302 cttccaccaccacacaacctccggtccaccgaaagaacaccaaaaaagcccaaaatcaaact 12296241  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 95
Target Start/End: Original strand, 43374043 - 43374109
Alignment:
Q  29 atcaacttccaccaccgcgcaacctccagtccatcgaaggaacaccaaaaaaccccaaaagcaaact 95  Q
    |||| ||||||||||||||||||||||  ||||  ||| ||||||||||||||| | ||| ||||||    
T  43374043 atcagcttccaccaccgcgcaacctccgatccactgaaagaacaccaaaaaacctcgaaatcaaact 43374109  T

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Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 252 - 323
Target Start/End: Original strand, 33863577 - 33863648
Alignment:
Q  252 ggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33863577 ggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 33863648  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 34 - 97
Target Start/End: Complemental strand, 35062584 - 35062521
Alignment:
Q  34 cttccaccaccgcgcaacctccagtccatcgaaggaacaccaaaaaaccccaaaagcaaactag 97  Q
    |||||||||||||||||||||   |||| |||||||||||| ||||| ||||||| ||||||||    
T  35062584 cttccaccaccgcgcaacctctgatccaccgaaggaacacctaaaaagcccaaaaccaaactag 35062521  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 41791218 - 41791264
Alignment:
Q  34 cttccaccaccgcgcaacctccagtccatcgaaggaacaccaaaaaa 80  Q
    ||||||||||||||||||||| |||||||||||  ||||||||||||    
T  41791218 cttccaccaccgcgcaacctctagtccatcgaaataacaccaaaaaa 41791264  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 17720655 - 17720714
Alignment:
Q  29 atcaacttccaccaccgcgcaacctccagtccatcgaaggaacaccaaaaaaccccaaaa 88  Q
    |||||||||||||||| | ||||||| |||||| |||| ||||||||||| | |||||||    
T  17720655 atcaacttccaccacctctcaacctcaagtccaccgaaagaacaccaaaacagcccaaaa 17720714  T

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Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 38485682 - 38485614
Alignment:
Q  34 cttccaccaccgcgcaacctccagtccatcgaaggaacaccaaaaaaccccaaaagcaaactagcacca 102  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||| ||||||| |||||||| ||||    
T  38485682 cttccaccaccgtgcaacctccggtccatcgaaggaacaccaaaaaagcccaaaaccaaactagaacca 38485614  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 46133225 - 46133276
Alignment:
Q  29 atcaacttccaccaccgcgcaacctccagtccatcgaaggaacaccaaaaaa 80  Q
    |||| ||||| ||||| |||||||||| ||||| ||||||||||||||||||    
T  46133225 atcagcttcccccaccacgcaacctccggtccaccgaaggaacaccaaaaaa 46133276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 26215968 - 26216032
Alignment:
Q  29 atcaacttccaccaccgcgcaacctccagtccatcgaaggaacaccaaaaaaccccaaaagcaaa 93  Q
    |||| ||||||||||||||||| |||| ||||| | || ||||||||||||| ||||||| ||||    
T  26215968 atcagcttccaccaccgcgcaatctccggtccaccaaaagaacaccaaaaaagcccaaaaccaaa 26216032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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