View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0538_low_15 (Length: 421)
Name: NF0538_low_15
Description: NF0538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0538_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-106; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 28 - 235
Target Start/End: Complemental strand, 39628768 - 39628561
Alignment:
| Q |
28 |
caagaacttcatctgagaaaccactattttcaaaatgcaatgtttttaatgttgaacggccatttgttgcggaagggatatctggaaaagactttgaagg |
127 |
Q |
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| T |
39628768 |
caagaacttgatctgacaaaccactattttcaaaatgcaatgtttttaatgttgaacggccatttgttgcggaagggatatctggaaaagactttgaagg |
39628669 |
T |
|
| Q |
128 |
gtactcgtcccactcaagcagccttaactgatttggcagatgtttaggctctgatgaaaatgttgtatttcgaacaatgagaattctgaggcgattcatc |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
39628668 |
gtactcgtcccactcaagcagccttaactgatttggcagatgtttaggctctgatgaaaatgttttatttcgaacaatgagaattctgaggcgattcatc |
39628569 |
T |
|
| Q |
228 |
ttctcaaa |
235 |
Q |
| |
|
|||||||| |
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| T |
39628568 |
ttctcaaa |
39628561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 262 - 405
Target Start/End: Complemental strand, 39621047 - 39620904
Alignment:
| Q |
262 |
ctcttgcttgacgatatctctacccatgtcttgtattagatcatgcatatccaagcagccatgtttaactattaaaagagatctattaacaagttcttca |
361 |
Q |
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|||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||| |
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| T |
39621047 |
ctcttgcttgacaatatctctgcccatctcttgtattagatcatgcatatccaagcagccatctttaactattaagagagatttattaacaagttcttca |
39620948 |
T |
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| Q |
362 |
atattagatactgcactgaattcacccagtatctcttcaacata |
405 |
Q |
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||| || ||||||| ||| ||| | ||||||||||||||||| |
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| T |
39620947 |
ataccagttactgcagcgaagtcatcaagtatctcttcaacata |
39620904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 111 - 235
Target Start/End: Complemental strand, 39621441 - 39621317
Alignment:
| Q |
111 |
ggaaaagactttgaagggtactcgtcccactcaagcagccttaactgatttggcagatgtttaggctctgatgaaaatgttgtatttcgaacaatgagaa |
210 |
Q |
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||||| ||||||||||||||||| ||||| |||||||| |||| | || ||| |||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
39621441 |
ggaaatgactttgaagggtactcctcccaatcaagcagagttaaattatctggtagatgtttaggctccgatgaaaatgttgtatttcgaacaatgagaa |
39621342 |
T |
|
| Q |
211 |
ttctgaggcgattcatcttctcaaa |
235 |
Q |
| |
|
||||||||| |||||||| |||||| |
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| T |
39621341 |
ttctgaggcaattcatctgctcaaa |
39621317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 29 - 109
Target Start/End: Complemental strand, 39622185 - 39622105
Alignment:
| Q |
29 |
aagaacttcatctgagaaaccactattttcaaaatgcaatgtttttaatgttgaacggccatttgttgcggaagggatatc |
109 |
Q |
| |
|
|||| ||||||| || |||||||||||| |||||||||||| ||||||||||||||| ||||| | ||| ||||||||||| |
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|
| T |
39622185 |
aagatcttcatcagacaaaccactatttccaaaatgcaatgcttttaatgttgaacgaccattggctgctgaagggatatc |
39622105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 278 - 323
Target Start/End: Complemental strand, 7828532 - 7828487
Alignment:
| Q |
278 |
tctctacccatgtcttgtattagatcatgcatatccaagcagccat |
323 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
7828532 |
tctctacccatatcttgtattagatcatgcatctccaagcagccat |
7828487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 278 - 309
Target Start/End: Original strand, 7754321 - 7754352
Alignment:
| Q |
278 |
tctctacccatgtcttgtattagatcatgcat |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
7754321 |
tctctacccatgtcttgtattagatcatgcat |
7754352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 278 - 309
Target Start/End: Original strand, 7837837 - 7837868
Alignment:
| Q |
278 |
tctctacccatgtcttgtattagatcatgcat |
309 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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|
| T |
7837837 |
tctctacccatgtcttgtattagatcatgcat |
7837868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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