View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0538_low_17 (Length: 412)
Name: NF0538_low_17
Description: NF0538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0538_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 11 - 292
Target Start/End: Complemental strand, 47267413 - 47267132
Alignment:
| Q |
11 |
ataaaatcattgaaccacttcaaaaaataaccaagtttcatccaactccctcactcgaattaaaacagataacttggtaaatgaggaggcgaaggcaggt |
110 |
Q |
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| T |
47267413 |
ataaaatcattgaaccacttcaaaaaataaccaagtttcatccaactccctcactcgaattaaaacagataacttggtaaatgaggaggcgaaggcaggt |
47267314 |
T |
|
| Q |
111 |
tagccacgtacttatactgttacaatgtaaagatgccatgtcattgaaatagccaaagtaaagtcttaaggaatgtgatgaaaaaataaccaccttgtac |
210 |
Q |
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| T |
47267313 |
tagccacgtatttatactgttacaatgtaaagatgccatgtcattgaaatagccaaagtaaagtcttaaggaatgtgatgaaaaaataaccaccttgtac |
47267214 |
T |
|
| Q |
211 |
tgcttgtatttctcccgagtagcttcaaatgacccttcccgtcttgacatatacagatcatgtaagatgagaacacattctt |
292 |
Q |
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| T |
47267213 |
tgcttgtatttctcccgagtagcttcaaatgacccttcccgtcttgacatatacagatcatgtaagatgagaacacattctt |
47267132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 146; Significance: 9e-77; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 14 - 292
Target Start/End: Original strand, 637088 - 637360
Alignment:
| Q |
14 |
aaatcattgaaccacttcaaaaaataaccaagtttcatccaactccctcactcgaattaaaacagataacttggtaaatgaggaggcgaaggcaggttag |
113 |
Q |
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||||||||| ||||| ||| ||||||| ||||||||||||||||||||| ||| | ||||||||||| | | |||||||| |||||||||||||||||| |
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| T |
637088 |
aaatcattgtaccacatcagaaaataatcaagtttcatccaactccctcgctcaagttaaaacagatgattcggtaaatgccgaggcgaaggcaggttag |
637187 |
T |
|
| Q |
114 |
ccacgtacttatactgttacaatgtaaagatgccatgtcattgaaatagccaaagtaaagtcttaaggaatgtgatgaaaaaataaccaccttgtactgc |
213 |
Q |
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||||||||||| | |||||||| |||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||| |||| |
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| T |
637188 |
ccacgtacttaaattgttacaag----agataccatgtcattgaaatagccaaagtaaaatct-aaggaatgtgatgaaaaaatagccaccttg-actga |
637281 |
T |
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| Q |
214 |
ttgtatttctcccgagtagcttcaaatgacccttcccgtcttgacatatacagatcatgtaagatgagaacacattctt |
292 |
Q |
| |
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|||||||||||| ||||||| |||||||||||||||||| |||||||||||| ||||| ||||||||| |||||||||| |
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| T |
637282 |
ttgtatttctccggagtagcatcaaatgacccttcccgttttgacatatacaaatcatataagatgaggacacattctt |
637360 |
T |
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