View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0538_low_18 (Length: 411)

Name: NF0538_low_18
Description: NF0538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0538_low_18
NF0538_low_18
[»] chr8 (2 HSPs)
chr8 (133-411)||(14995192-14995470)
chr8 (103-139)||(22732207-22732243)
[»] chr4 (15 HSPs)
chr4 (133-411)||(41860585-41860863)
chr4 (133-411)||(52681467-52681745)
chr4 (266-411)||(30576543-30576688)
chr4 (136-290)||(15056967-15057124)
chr4 (297-393)||(14991327-14991423)
chr4 (269-315)||(47964110-47964156)
chr4 (103-139)||(41861939-41861975)
chr4 (103-139)||(41862030-41862066)
chr4 (103-139)||(41862121-41862157)
chr4 (103-139)||(41862212-41862248)
chr4 (103-139)||(41862403-41862439)
chr4 (103-139)||(41946638-41946674)
chr4 (103-139)||(41946729-41946765)
chr4 (103-139)||(52680359-52680395)
chr4 (103-139)||(53285696-53285732)
[»] chr7 (11 HSPs)
chr7 (133-411)||(22005714-22005992)
chr7 (133-411)||(7892490-7892768)
chr7 (132-411)||(3598962-3599241)
chr7 (271-390)||(13604144-13604262)
chr7 (103-139)||(3600149-3600185)
chr7 (103-139)||(5090967-5091003)
chr7 (103-139)||(7891382-7891418)
chr7 (103-139)||(13927440-13927476)
chr7 (103-139)||(22004323-22004359)
chr7 (103-139)||(22004514-22004550)
chr7 (103-139)||(22004605-22004641)
[»] chr5 (7 HSPs)
chr5 (133-411)||(32674006-32674284)
chr5 (133-329)||(22636691-22636891)
chr5 (271-364)||(21122329-21122422)
chr5 (103-139)||(20844506-20844542)
chr5 (103-139)||(23179540-23179576)
chr5 (103-139)||(23179631-23179667)
chr5 (103-139)||(32672891-32672927)
[»] chr3 (15 HSPs)
chr3 (133-411)||(26950254-26950532)
chr3 (133-411)||(36092515-36092793)
chr3 (133-411)||(18200483-18200761)
chr3 (271-357)||(12807577-12807663)
chr3 (277-364)||(14458470-14458557)
chr3 (103-139)||(854976-855012)
chr3 (103-139)||(6953291-6953327)
chr3 (103-139)||(6953430-6953466)
chr3 (103-139)||(6953812-6953848)
chr3 (103-139)||(18199352-18199388)
chr3 (103-139)||(36093873-36093909)
chr3 (103-139)||(36093964-36094000)
chr3 (103-139)||(36947725-36947761)
chr3 (103-139)||(36947864-36947900)
chr3 (103-139)||(36948003-36948039)
[»] chr2 (9 HSPs)
chr2 (133-411)||(13906996-13907274)
chr2 (133-411)||(26454641-26454919)
chr2 (133-411)||(40604478-40604756)
chr2 (103-139)||(32287325-32287361)
chr2 (103-139)||(13899908-13899944)
chr2 (103-139)||(13905806-13905842)
chr2 (103-139)||(26453534-26453570)
chr2 (103-139)||(35433139-35433175)
chr2 (103-139)||(40603369-40603405)
[»] chr6 (1 HSPs)
chr6 (133-411)||(3590335-3590613)
[»] chr1 (8 HSPs)
chr1 (133-409)||(35595664-35595940)
chr1 (133-411)||(2045961-2046239)
chr1 (331-398)||(52589715-52589782)
chr1 (103-139)||(2051974-2052010)
chr1 (103-139)||(39514207-39514243)
chr1 (103-139)||(45507254-45507290)
chr1 (103-139)||(45507403-45507439)
chr1 (103-139)||(49791612-49791648)
[»] scaffold0121 (3 HSPs)
scaffold0121 (103-139)||(41422-41458)
scaffold0121 (103-139)||(41240-41276)
scaffold0121 (103-139)||(41331-41367)
[»] scaffold0160 (1 HSPs)
scaffold0160 (103-139)||(36132-36168)


Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 133 - 411
Target Start/End: Complemental strand, 14995470 - 14995192
Alignment:
Q  133 tcctcctcttctttgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttac 232  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14995470 tcctcctcttttttgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttac 14995371  T
Q  233 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagcat 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14995370 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagcat 14995271  T
Q  333 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgctatctaatttattatcatctctt 411  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  14995270 ttgtttagtttgatttttggttatttgtaatccgatgactgtttgaattgcattgctatctaatttattatcatctctt 14995192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 139
Target Start/End: Complemental strand, 22732243 - 22732207
Alignment:
Q  103 caaaccctaaccatgatttcctaatttctatcctcct 139  Q
    ||||||||||||||||||||||||||||  |||||||    
T  22732243 caaaccctaaccatgatttcctaatttcactcctcct 22732207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 133 - 411
Target Start/End: Complemental strand, 41860863 - 41860585
Alignment:
Q  133 tcctcctcttctttgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttac 232  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41860863 tcctcctcttttctgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttac 41860764  T
Q  233 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagcat 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41860763 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagcat 41860664  T
Q  333 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgctatctaatttattatcatctctt 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41860663 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgctatctaatttattatcatctctt 41860585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 133 - 411
Target Start/End: Original strand, 52681467 - 52681745
Alignment:
Q  133 tcctcctcttctttgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttac 232  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  52681467 tcctcctcttttctgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaacagctttttaggcttcttac 52681566  T
Q  233 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagcat 332  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||    
T  52681567 aaaatcaaagtaattgttatataattggtgtggggtttagtttgttgattttgcaattcaggaattttcaaattcggggttgaaataagagtatgagcat 52681666  T
Q  333 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgctatctaatttattatcatctctt 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  52681667 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattggattgctatctaatttattatcatctctt 52681745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 266 - 411
Target Start/End: Complemental strand, 30576688 - 30576543
Alignment:
Q  266 ggtttggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagcatttgtttagtttgatttttggttatttgtaatcc 365  Q
    ||||||||||||| ||||||||||  || ||||| |||| | | |||||||||||||| | |||| |||||||| || ||||||| |||||||||||| |    
T  30576688 ggtttggtttgttcattttgcagtagagaaatttccaaaatggcggttggaataagagcaagagcttttgtttaattggattttttgttatttgtaattc 30576589  T
Q  366 gatgactttttgaattgcattgctatctaatttattatcatctctt 411  Q
    || || |||||||||| ||||| |||||||||||||| ||||||||    
T  30576588 gacgagtttttgaatttcattgttatctaatttattaccatctctt 30576543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 136 - 290
Target Start/End: Original strand, 15056967 - 15057124
Alignment:
Q  136 tcctcttctttgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttacaaa 235  Q
    |||||||||| ||||| ||| ||||||||  |||||| ||  | |||||||||| | |||| |||||||| |||||||||||| ||||  |||||  |||    
T  15056967 tcctcttcttcgtgaccaagtttaaccacgtatctttattctctttcaattcctttgttgttcaaaatagattgcaatagcttcttagatttcttttaaa 15057066  T
Q  236 atcaaagtaattgtt----atatgattggtgtggggtttggtttgttgattttgcagtt 290  Q
    ||||| |||||||||    ||||||||| |||  |||||||| ||||||||||| ||||    
T  15057067 atcaacgtaattgttgttcatatgattgttgt-aggtttggtatgttgattttggagtt 15057124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 393
Target Start/End: Original strand, 14991327 - 14991423
Alignment:
Q  297 ttttcaaattcggggttggaataagagtaggagcatttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgctatct 393  Q
    ||||| |||| ||||||| |||||||||   |  ||||||||| |||||| |||||||||||||| |  |||||  || ||||||||||||||||||    
T  14991327 ttttctaattgggggttgtaataagagtgaaaatatttgtttaatttgatctttggttatttgtattatgatgagattctgaattgcattgctatct 14991423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 315
Target Start/End: Complemental strand, 47964156 - 47964110
Alignment:
Q  269 ttggtttgttgattttgcagttcaggaattttcaaattcggggttgg 315  Q
    |||||||||||||||| ||||| | ||||||||||||| ||||||||    
T  47964156 ttggtttgttgattttacagtttatgaattttcaaattaggggttgg 47964110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 139
Target Start/End: Complemental strand, 41861975 - 41861939
Alignment:
Q  103 caaaccctaaccatgatttcctaatttctatcctcct 139  Q
    ||||||||||||||||||||||||||||  |||||||    
T  41861975 caaaccctaaccatgatttcctaatttccctcctcct 41861939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 139
Target Start/End: Complemental strand, 41862066 - 41862030
Alignment:
Q  103 caaaccctaaccatgatttcctaatttctatcctcct 139  Q
    ||||||||||||||||||||||||||||  |||||||    
T  41862066 caaaccctaaccatgatttcctaatttccctcctcct 41862030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 139
Target Start/End: Complemental strand, 41862157 - 41862121
Alignment:
Q  103 caaaccctaaccatgatttcctaatttctatcctcct 139  Q
    ||||||||||||||||||||||||||||  |||||||    
T  41862157 caaaccctaaccatgatttcctaatttccctcctcct 41862121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 139
Target Start/End: Complemental strand, 41862248 - 41862212
Alignment:
Q  103 caaaccctaaccatgatttcctaatttctatcctcct 139  Q
    ||||||||||||||||||||||||||||  |||||||    
T  41862248 caaaccctaaccatgatttcctaatttccctcctcct 41862212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 139
Target Start/End: Complemental strand, 41862439 - 41862403
Alignment:
Q  103 caaaccctaaccatgatttcctaatttctatcctcct 139  Q
    ||||||||||||||||||||||||||||  |||||||    
T  41862439 caaaccctaaccatgatttcctaatttccctcctcct 41862403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 139
Target Start/End: Complemental strand, 41946674 - 41946638
Alignment:
Q  103 caaaccctaaccatgatttcctaatttctatcctcct 139  Q
    ||||||||||||||||||||||||||||  |||||||    
T  41946674 caaaccctaaccatgatttcctaatttccctcctcct 41946638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 139
Target Start/End: Complemental strand, 41946765 - 41946729
Alignment:
Q  103 caaaccctaaccatgatttcctaatttctatcctcct 139  Q
    ||||||||||||||||||||||||||||  |||||||    
T  41946765 caaaccctaaccatgatttcctaatttccctcctcct 41946729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 139
Target Start/End: Original strand, 52680359 - 52680395
Alignment:
Q  103 caaaccctaaccatgatttcctaatttctatcctcct 139  Q
    ||||||||||||||||||||||||||||  |||||||    
T  52680359 caaaccctaaccatgatttcctaatttccctcctcct 52680395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 139
Target Start/End: Original strand, 53285696 - 53285732
Alignment:
Q  103 caaaccctaaccatgatttcctaatttctatcctcct 139  Q
    ||||||||||||||||||||||||||||  |||||||    
T  53285696 caaaccctaaccatgatttcctaatttcactcctcct 53285732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 133 - 411
Target Start/End: Original strand, 22005714 - 22005992
Alignment:
Q  133 tcctcctcttctttgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttac 232  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22005714 tcctcctcttttctgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttac 22005813  T
Q  233 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagcat 332  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  22005814 aaaatcaaagtaattgttatatgattggtgtggggtttggttttttgattttgcagttcaggaattttcaaattcggggttgaaataagagtaggagcat 22005913  T
Q  333 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgctatctaatttattatcatctctt 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22005914 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgctatctaatttattatcatctctt 22005992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 133 - 411
Target Start/End: Original strand, 7892490 - 7892768
Alignment:
Q  133 tcctcctcttctttgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttac 232  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  7892490 tcctcctcttttctgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaacagctttttaggcttcttac 7892589  T
Q  233 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagcat 332  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  7892590 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcaggaattttcaaattcggggttgaaataagagtatgagcat 7892689  T
Q  333 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgctatctaatttattatcatctctt 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7892690 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattggattgctatctaatttattatcatctctt 7892768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 132 - 411
Target Start/End: Complemental strand, 3599241 - 3598962
Alignment:
Q  132 atcctcctcttctttgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttctta 231  Q
    ||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3599241 atcctcctcttatctgtgactaaggttaaccacacatctttctttacattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttctta 3599142  T
Q  232 caaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagca 331  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  3599141 caaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgtagttcaggaattttcaaattcggggttggaataagagtgggagca 3599042  T
Q  332 tttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgctatctaatttattatcatctctt 411  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  3599041 tttgtttagtttgatttttggttatttgtatttcgatgactttttgaattgcattgctatctaatttattatcatctctt 3598962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 271 - 390
Target Start/End: Complemental strand, 13604262 - 13604144
Alignment:
Q  271 ggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagcatttgtttagtttgatttttggttatttgtaatccgatga 370  Q
    |||||||||||||| || || | ||||||||||||| ||||||   |||||||||  | |||||||||| ||||||||||||||||| |||||| | |||    
T  13604262 ggtttgttgattttacattt-atgaattttcaaattaggggttaagataagagtaataacatttgtttaatttgatttttggttattcgtaatctggtga 13604164  T
Q  371 ctttttgaattgcattgcta 390  Q
     | ||| ||||| |||||||    
T  13604163 gtgtttaaattgtattgcta 13604144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 139
Target Start/End: Complemental strand, 3600185 - 3600149
Alignment:
Q  103 caaaccctaaccatgatttcctaatttctatcctcct 139  Q
    ||||||||||||||||||||||||||||  |||||||    
T  3600185 caaaccctaaccatgatttcctaatttccctcctcct 3600149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 139
Target Start/End: Original strand, 5090967 - 5091003
Alignment:
Q  103 caaaccctaaccatgatttcctaatttctatcctcct 139  Q
    ||||||||||||||||||||||||||||  |||||||    
T  5090967 caaaccctaaccatgatttcctaatttcactcctcct 5091003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 139
Target Start/End: Original strand, 7891382 - 7891418
Alignment:
Q  103 caaaccctaaccatgatttcctaatttctatcctcct 139  Q
    ||||||||||||||||||||||||||||  |||||||    
T  7891382 caaaccctaaccatgatttcctaatttccctcctcct 7891418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 139
Target Start/End: Original strand, 13927440 - 13927476
Alignment:
Q  103 caaaccctaaccatgatttcctaatttctatcctcct 139  Q
    ||||||||||||||||||||||||||||  |||||||    
T  13927440 caaaccctaaccatgatttcctaatttccctcctcct 13927476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 139
Target Start/End: Original strand, 22004323 - 22004359
Alignment:
Q  103 caaaccctaaccatgatttcctaatttctatcctcct 139  Q
    ||||||||||||||||||||||||||||  |||||||    
T  22004323 caaaccctaaccatgatttcctaatttccctcctcct 22004359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 139
Target Start/End: Original strand, 22004514 - 22004550
Alignment:
Q  103 caaaccctaaccatgatttcctaatttctatcctcct 139  Q
    ||||||||||||||||||||||||||||  |||||||    
T  22004514 caaaccctaaccatgatttcctaatttccctcctcct 22004550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 139
Target Start/End: Original strand, 22004605 - 22004641
Alignment:
Q  103 caaaccctaaccatgatttcctaatttctatcctcct 139  Q
    ||||||||||||||||||||||||||||  |||||||    
T  22004605 caaaccctaaccatgatttcctaatttccctcctcct 22004641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 133 - 411
Target Start/End: Original strand, 32674006 - 32674284
Alignment:
Q  133 tcctcctcttctttgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttac 232  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  32674006 tcctcctcttttctgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaataacttgcaatagctttttaggcttcttac 32674105  T
Q  233 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagcat 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  32674106 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcaattcaggaattttcaaattcggggttggaataagagtaggagcat 32674205  T
Q  333 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgctatctaatttattatcatctctt 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32674206 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgctatctaatttattatcatctctt 32674284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 133 - 329
Target Start/End: Complemental strand, 22636891 - 22636691
Alignment:
Q  133 tcctcctcttctttgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttac 232  Q
    ||||||||||||  |||||||||||||||| || |||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  22636891 tcctcctcttctccgtgactaaggttaaccgcatatctttctttccgttcaattcctcttttgttcaaaatagcttgcaatagctttttaggcttcttac 22636792  T
Q  233 aaaatcaaagtaattgtt----atatgattggtgtggggtttggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtagga 328  Q
    ||||||||||||||||||    |||||||||||||||||||| ||||||||||||||||||| | || |||||||||| | |||||||| ||||||||||    
T  22636791 aaaatcaaagtaattgttgttcatatgattggtgtggggttttgtttgttgattttgcagtttatgagttttcaaattggtggttggaaaaagagtagga 22636692  T
Q  329 g 329  Q
    |    
T  22636691 g 22636691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 271 - 364
Target Start/End: Original strand, 21122329 - 21122422
Alignment:
Q  271 ggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagcatttgtttagtttgatttttggttatttgtaatc 364  Q
    |||||||||||||| | ||  | ||||||| ||||| ||||||   |||||||||  |||||||||||| ||| ||||||||||||| ||||||    
T  21122329 ggtttgttgattttacggtctatgaatttttaaattaggggttaagataagagtaatagcatttgtttaattttatttttggttattcgtaatc 21122422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 139
Target Start/End: Original strand, 20844506 - 20844542
Alignment:
Q  103 caaaccctaaccatgatttcctaatttctatcctcct 139  Q
    ||||||||||||||||||||||||||||  |||||||    
T  20844506 caaaccctaaccatgatttcctaatttccctcctcct 20844542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 139
Target Start/End: Original strand, 23179540 - 23179576
Alignment:
Q  103 caaaccctaaccatgatttcctaatttctatcctcct 139  Q
    ||||||||||||||||||||||||||||  |||||||    
T  23179540 caaaccctaaccatgatttcctaatttccctcctcct 23179576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 139
Target Start/End: Original strand, 23179631 - 23179667
Alignment:
Q  103 caaaccctaaccatgatttcctaatttctatcctcct 139  Q
    ||||||||||||||||||||||||||||  |||||||    
T  23179631 caaaccctaaccatgatttcctaatttccctcctcct 23179667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 139
Target Start/End: Original strand, 32672891 - 32672927
Alignment:
Q  103 caaaccctaaccatgatttcctaatttctatcctcct 139  Q
    ||||||||||||||||||||||||||||  |||||||    
T  32672891 caaaccctaaccatgatttcctaatttccctcctcct 32672927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 133 - 411
Target Start/End: Original strand, 26950254 - 26950532
Alignment:
Q  133 tcctcctcttctttgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttac 232  Q
    |||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26950254 tcctcctcttttctgtgactaaggttaaccacacatctttctttgcattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttac 26950353  T
Q  233 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagcat 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26950354 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagcat 26950453  T
Q  333 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgctatctaatttattatcatctctt 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  26950454 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgttatctaatttattatcatctctt 26950532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 133 - 411
Target Start/End: Complemental strand, 36092793 - 36092515
Alignment:
Q  133 tcctcctcttctttgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttac 232  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36092793 tcctcctcttttctgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttac 36092694  T
Q  233 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagcat 332  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  36092693 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcatgaattttcaaattcggggttggaataagagtaggagcat 36092594  T
Q  333 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgctatctaatttattatcatctctt 411  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  36092593 ttgtttagtttgatttttggttatttgtaatctgatgactttttgaattgcattgctatctaatttattatcatctctt 36092515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 133 - 411
Target Start/End: Original strand, 18200483 - 18200761
Alignment:
Q  133 tcctcctcttctttgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttac 232  Q
    |||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  18200483 tcctcctcttttatgtgactaaggttaaccacacatctttctctccattcaattcctctattgtacaaaatagcttgcaatagctttttagacttcttac 18200582  T
Q  233 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagcat 332  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  18200583 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcaggaattttcaaatttggggttggaataagaataggagcat 18200682  T
Q  333 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgctatctaatttattatcatctctt 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18200683 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgctatctaatttattatcatctctt 18200761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 271 - 357
Target Start/End: Complemental strand, 12807663 - 12807577
Alignment:
Q  271 ggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagcatttgtttagtttgatttttggttatt 357  Q
    |||||||||||||| ||||| | ||||||||||||| ||||||   |||||||||  | |||||||||| |||||||||||||||||    
T  12807663 ggtttgttgattttacagtttatgaattttcaaattaggggttaagataagagtaataacatttgtttaatttgatttttggttatt 12807577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 277 - 364
Target Start/End: Complemental strand, 14458557 - 14458470
Alignment:
Q  277 ttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagcatttgtttagtttgatttttggttatttgtaatc 364  Q
    |||||||| ||||| | ||||||||||||| || |||   |||||||||  |||||||||||| ||| ||||||||| ||| ||||||    
T  14458557 ttgattttacagtttatgaattttcaaattaggagttaagataagagtaatagcatttgtttaattttatttttggtaattcgtaatc 14458470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 139
Target Start/End: Original strand, 854976 - 855012
Alignment:
Q  103 caaaccctaaccatgatttcctaatttctatcctcct 139  Q
    ||||||||||||||||||||||||||||  |||||||    
T  854976 caaaccctaaccatgatttcctaatttccctcctcct 855012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 139
Target Start/End: Complemental strand, 6953327 - 6953291
Alignment:
Q  103 caaaccctaaccatgatttcctaatttctatcctcct 139  Q
    ||||||||||||||||||||||||||||  |||||||    
T  6953327 caaaccctaaccatgatttcctaatttccctcctcct 6953291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 139
Target Start/End: Complemental strand, 6953466 - 6953430
Alignment:
Q  103 caaaccctaaccatgatttcctaatttctatcctcct 139  Q
    ||||||||||||||||||||||||||||  |||||||    
T  6953466 caaaccctaaccatgatttcctaatttccctcctcct 6953430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 139
Target Start/End: Complemental strand, 6953848 - 6953812
Alignment:
Q  103 caaaccctaaccatgatttcctaatttctatcctcct 139  Q
    ||||||||||||||||||||||||||||  |||||||    
T  6953848 caaaccctaaccatgatttcctaatttccctcctcct 6953812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 139
Target Start/End: Original strand, 18199352 - 18199388
Alignment:
Q  103 caaaccctaaccatgatttcctaatttctatcctcct 139  Q
    ||||||||||||||||||||||||||||  |||||||    
T  18199352 caaaccctaaccatgatttcctaatttccctcctcct 18199388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 139
Target Start/End: Complemental strand, 36093909 - 36093873
Alignment:
Q  103 caaaccctaaccatgatttcctaatttctatcctcct 139  Q
    ||||||||||||||||||||||||||||  |||||||    
T  36093909 caaaccctaaccatgatttcctaatttccctcctcct 36093873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 139
Target Start/End: Complemental strand, 36094000 - 36093964
Alignment:
Q  103 caaaccctaaccatgatttcctaatttctatcctcct 139  Q
    ||||||||||||||||||||||||||||  |||||||    
T  36094000 caaaccctaaccatgatttcctaatttccctcctcct 36093964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 139
Target Start/End: Complemental strand, 36947761 - 36947725
Alignment:
Q  103 caaaccctaaccatgatttcctaatttctatcctcct 139  Q
    ||||||||||||||||||||||||||||  |||||||    
T  36947761 caaaccctaaccatgatttcctaatttccctcctcct 36947725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 139
Target Start/End: Complemental strand, 36947900 - 36947864
Alignment:
Q  103 caaaccctaaccatgatttcctaatttctatcctcct 139  Q
    ||||||||||||||||||||||||||||  |||||||    
T  36947900 caaaccctaaccatgatttcctaatttccctcctcct 36947864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 139
Target Start/End: Complemental strand, 36948039 - 36948003
Alignment:
Q  103 caaaccctaaccatgatttcctaatttctatcctcct 139  Q
    ||||||||||||||||||||||||||||  |||||||    
T  36948039 caaaccctaaccatgatttcctaatttccctcctcct 36948003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 133 - 411
Target Start/End: Original strand, 13906996 - 13907274
Alignment:
Q  133 tcctcctcttctttgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttac 232  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13906996 tcctcctcttttctgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttac 13907095  T
Q  233 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagcat 332  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  13907096 aaaatcaaagtaattgttatatgattggtgtggggtttggttttttgattttgcagttcaggaattttcaaattcggggttgaaataagagtaggagcat 13907195  T
Q  333 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgctatctaatttattatcatctctt 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13907196 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgctatctaatttattatcatctctt 13907274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 133 - 411
Target Start/End: Original strand, 26454641 - 26454919
Alignment:
Q  133 tcctcctcttctttgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttac 232  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26454641 tcctcctcttttctgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaacagctttttaggcttcttac 26454740  T
Q  233 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagcat 332  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  26454741 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcaggaattttcaaattcggggttgaaataagagtatgagcat 26454840  T
Q  333 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgctatctaatttattatcatctctt 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26454841 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgctatctaatttattatcatctctt 26454919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 133 - 411
Target Start/End: Original strand, 40604478 - 40604756
Alignment:
Q  133 tcctcctcttctttgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttac 232  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  40604478 tcctcctcttttctgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaacaactttttaggcttcttac 40604577  T
Q  233 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagcat 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||    
T  40604578 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcagaaattttcaaattcggggttgaaataagagtatgagcat 40604677  T
Q  333 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgctatctaatttattatcatctctt 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  40604678 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattggattgctatctaatttattatcatctctt 40604756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 139
Target Start/End: Original strand, 32287325 - 32287361
Alignment:
Q  103 caaaccctaaccatgatttcctaatttctatcctcct 139  Q
    |||||||||||||||||||||||||||| ||||||||    
T  32287325 caaaccctaaccatgatttcctaatttccatcctcct 32287361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 139
Target Start/End: Original strand, 13899908 - 13899944
Alignment:
Q  103 caaaccctaaccatgatttcctaatttctatcctcct 139  Q
    ||||||||||||||||||||||||||||  |||||||    
T  13899908 caaaccctaaccatgatttcctaatttccctcctcct 13899944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 139
Target Start/End: Original strand, 13905806 - 13905842
Alignment:
Q  103 caaaccctaaccatgatttcctaatttctatcctcct 139  Q
    ||||||||||||||||||||||||||||  |||||||    
T  13905806 caaaccctaaccatgatttcctaatttccctcctcct 13905842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 139
Target Start/End: Original strand, 26453534 - 26453570
Alignment:
Q  103 caaaccctaaccatgatttcctaatttctatcctcct 139  Q
    ||||||||||||||||||||||||||||  |||||||    
T  26453534 caaaccctaaccatgatttcctaatttccctcctcct 26453570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 139
Target Start/End: Complemental strand, 35433175 - 35433139
Alignment:
Q  103 caaaccctaaccatgatttcctaatttctatcctcct 139  Q
    ||||||||||||||||||||||||||||  |||||||    
T  35433175 caaaccctaaccatgatttcctaatttccctcctcct 35433139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 139
Target Start/End: Original strand, 40603369 - 40603405
Alignment:
Q  103 caaaccctaaccatgatttcctaatttctatcctcct 139  Q
    ||||||||||||||||||||||||||||  |||||||    
T  40603369 caaaccctaaccatgatttcctaatttccctcctcct 40603405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 133 - 411
Target Start/End: Original strand, 3590335 - 3590613
Alignment:
Q  133 tcctcctcttctttgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttac 232  Q
    |||||||||| | ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3590335 tcctcctcttttatgtgactaaggttaaccacacatctttctctctattcaattcctctattgtacaaaatagcttgcaatagctttttagacttcttac 3590434  T
Q  233 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagcat 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  3590435 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcagcaattttcaaattcggggttggaataagagtaggagcat 3590534  T
Q  333 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgctatctaatttattatcatctctt 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3590535 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgctatctaatttattatcatctctt 3590613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 253; Significance: 1e-140; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 133 - 409
Target Start/End: Complemental strand, 35595940 - 35595664
Alignment:
Q  133 tcctcctcttctttgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttac 232  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35595940 tcctcctcttttctgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttac 35595841  T
Q  233 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagcat 332  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  35595840 aaaatcaaaataattgttatatgattggtgtgggatttggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtgggagcat 35595741  T
Q  333 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgctatctaatttattatcatctc 409  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  35595740 ttgtttagtttgatttttggttatttgtaatccgttgactttttgaattgcattgctatctaatttattatcatctc 35595664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 133 - 411
Target Start/End: Complemental strand, 2046239 - 2045961
Alignment:
Q  133 tcctcctcttctttgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttac 232  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2046239 tcctcctcttttctgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaacagctttttaggcttcttac 2046140  T
Q  233 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagcat 332  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  2046139 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgtttattttgcagttcaggaattttcaaattcggggttgaaataagagtatgagcat 2046040  T
Q  333 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgctatctaatttattatcatctctt 411  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2046039 ttatttagtttgatttttggttatttgtaatccgatgactttttgaattggattgctatctaatttattatcatctctt 2045961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 331 - 398
Target Start/End: Original strand, 52589715 - 52589782
Alignment:
Q  331 atttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgctatctaattt 398  Q
    ||||||||  |||||||||| ||||||||||||   | || |||||||||||||||||||||||||||    
T  52589715 atttgtttgatttgattttttgttatttgtaatgtaacgagtttttgaattgcattgctatctaattt 52589782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 139
Target Start/End: Complemental strand, 2052010 - 2051974
Alignment:
Q  103 caaaccctaaccatgatttcctaatttctatcctcct 139  Q
    ||||||||||||||||||||||||||||  |||||||    
T  2052010 caaaccctaaccatgatttcctaatttccctcctcct 2051974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 139
Target Start/End: Complemental strand, 39514243 - 39514207
Alignment:
Q  103 caaaccctaaccatgatttcctaatttctatcctcct 139  Q
    ||||||||||||||||||||||||||||  |||||||    
T  39514243 caaaccctaaccatgatttcctaatttccctcctcct 39514207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 139
Target Start/End: Complemental strand, 45507290 - 45507254
Alignment:
Q  103 caaaccctaaccatgatttcctaatttctatcctcct 139  Q
    ||||||||||||||||||||||||||||  |||||||    
T  45507290 caaaccctaaccatgatttcctaatttccctcctcct 45507254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 139
Target Start/End: Complemental strand, 45507439 - 45507403
Alignment:
Q  103 caaaccctaaccatgatttcctaatttctatcctcct 139  Q
    ||||||||||||||||||||||||||||  |||||||    
T  45507439 caaaccctaaccatgatttcctaatttccctcctcct 45507403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 139
Target Start/End: Complemental strand, 49791648 - 49791612
Alignment:
Q  103 caaaccctaaccatgatttcctaatttctatcctcct 139  Q
    ||||||||||||||||||||||||||||  |||||||    
T  49791648 caaaccctaaccatgatttcctaatttccctcctcct 49791612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 139
Target Start/End: Original strand, 41422 - 41458
Alignment:
Q  103 caaaccctaaccatgatttcctaatttctatcctcct 139  Q
    |||||||||||||||||||||||||||| ||||||||    
T  41422 caaaccctaaccatgatttcctaatttccatcctcct 41458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 139
Target Start/End: Original strand, 41240 - 41276
Alignment:
Q  103 caaaccctaaccatgatttcctaatttctatcctcct 139  Q
    ||||||||||||||||||||||||||||  |||||||    
T  41240 caaaccctaaccatgatttcctaatttccctcctcct 41276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 139
Target Start/End: Original strand, 41331 - 41367
Alignment:
Q  103 caaaccctaaccatgatttcctaatttctatcctcct 139  Q
    ||||||||||||||||||||||||||||  |||||||    
T  41331 caaaccctaaccatgatttcctaatttccctcctcct 41367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 139
Target Start/End: Original strand, 36132 - 36168
Alignment:
Q  103 caaaccctaaccatgatttcctaatttctatcctcct 139  Q
    ||||||||||||||||||||||||||||  |||||||    
T  36132 caaaccctaaccatgatttcctaatttccctcctcct 36168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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