View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0538_low_20 (Length: 400)
Name: NF0538_low_20
Description: NF0538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0538_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 10 - 394
Target Start/End: Complemental strand, 37177041 - 37176653
Alignment:
| Q |
10 |
attattctctttgctccaaattccaactaaacaacaa----cacatcgatgattctctctcattaatccatttcaacacttcaattattattactaagaa |
105 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37177041 |
attattctctttgctccaaattccaactaaacaacaaacaacacatcgatgattctctctcattaatccatttcaacacttcaattattattactaagaa |
37176942 |
T |
|
| Q |
106 |
tcatgttnnnnnnnnnnnnngttgtccacttcaactaatcttccgcacctagaaatgagttaatagtaacatctgactaaatttctttgacga----act |
201 |
Q |
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||||||| |||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||| |
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| T |
37176941 |
tcatgtttctctctct----gttgtccacttcaactaaccttccgcacctaaaaattagttaatagtaacatctgactaaatttctttgacgatcgaact |
37176846 |
T |
|
| Q |
202 |
gagacccgatgtcggagaattctgaaatatctccgagcatgtcttcaacaagtctcggagatataccagaaatctccgcaatacatctaggaatcgatct |
301 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37176845 |
gagatccgatgtcggagaattctgaaatatctccgagcatgtcttcaacaagtctcggagatataccagaaatctccgcaatacatctaggaatcgatct |
37176746 |
T |
|
| Q |
302 |
cgtatcagcagccaaacgaaacatcacgttcttgaaaagtgttgcagattctcaatggcttcaccatacaaacattacagttgaagcaatacg |
394 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37176745 |
cgtatcagcagccaaacgtaacatcacgttcttgaaaagtgttgcagattctcaatggcttcaccatacaaacattacagttgaagcaatacg |
37176653 |
T |
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