View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0538_low_21 (Length: 382)
Name: NF0538_low_21
Description: NF0538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0538_low_21 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 30 - 372
Target Start/End: Complemental strand, 44436671 - 44436327
Alignment:
| Q |
30 |
catgggagttttgatgataagttgcacactttccttgaatgctctcgttttgttaattgttagaaggaattgcatatgtggactataatcaagcatcact |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44436671 |
catgggagttttgatgataagttgcacactttccttgaatgctctcgttttgttaattgttagaaggaattgcatatgtggactataatcaagcatcact |
44436572 |
T |
|
| Q |
130 |
ttaccggtaggcaatttttgttttcccatcattttatctattgtgcaggccttggtg--gtgagaaaaaatcacgcttctaatctagcctttgaagtata |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44436571 |
ttaccggtaggcaatttttgttttcccatcattttatctattgtgcaggccttggtgtggtgagaaaaaatcacgcttctaatctagcctttgaagtata |
44436472 |
T |
|
| Q |
228 |
ctgttacgcagctgctttaggaggcttcaaatgttagtatggcaaaaagatatatagaggaaaatcaatagagatgtatgtagaattgtggtagagcatc |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44436471 |
ctgttacgcagctgctttaggaggcttcaaatgttagtatggcaaaaagatatatagaggaaaatcaatagagatgtatgtagaattgtggtagagcatc |
44436372 |
T |
|
| Q |
328 |
atcctcatagaagatgacattcgcagcaaaaaatacgttcctatg |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44436371 |
ttcctcatagaagatgacattcgcagcaaaaaatacgttcctatg |
44436327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 11 times since January 2019
Visitors: 3673