View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0538_low_23 (Length: 373)
Name: NF0538_low_23
Description: NF0538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0538_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 2947086 - 2946744
Alignment:
| Q |
1 |
tctcattttctttccatcttttcaaagctagttgcttcaaagaatctcaaaaagtaatgtagttagcttctttagcaagtactataaataaacattcaag |
100 |
Q |
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| T |
2947086 |
tctcattttctttccatcttttcaaagttagttgcttcaaagaatctcaaaaagtaatgtagttagcttctttagcaagtactataaataaacatttaag |
2946987 |
T |
|
| Q |
101 |
taacttagatgctagtctatcatgtccattcttttacaattttgtgatccaaaaagaaatggtctacagggaatggaaccgagtggtgctaccaaacatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2946986 |
taacttagatgctagtctatcatgtccattcttttacaattttgtgatccaaaaagaaatggtctacagggaatggaaccgagtggtgctaccaaacatt |
2946887 |
T |
|
| Q |
201 |
tcctggcttttggtggaggcatgagattttgtgttgggacagaatttgctaaggttcagatggcagtttttcttcattgcttggtaacaaagtataggta |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2946886 |
tcctggcttttggtggaggcatgagattttgtgttgggacagaatttgctaaggttcagatggcagtttttcttcattgcttggtaacaaagtataggta |
2946787 |
T |
|
| Q |
301 |
ataagcaatgtcatgcatggaaagagactttaaactgaaacaa |
343 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2946786 |
ataagcaatgtcatgcatggaaagagactttaaactgaaacaa |
2946744 |
T |
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