View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0538_low_24 (Length: 365)
Name: NF0538_low_24
Description: NF0538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0538_low_24 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 3746044 - 3745708
Alignment:
| Q |
1 |
tttcagattcttttggcatgacatcatgagtggaaaaaaccctacttcaattacagttgtaccactaccattgaagctaaatacaactacttcttttggg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
3746044 |
tttcagattcttttggcatgacatcatgagtggaaaaaaccctacttcaattacagttgtaccactaccattgaagctaaacacaactacttcttttggt |
3745945 |
T |
|
| Q |
101 |
ttagtcaacattattgacaaccctttaactttaggaccaaaaatgagttctaagcttgttggaaaagctcaagggttgtatgcatctgcatcaaaggatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3745944 |
ttagtcaacattattgacaaccctttaactttaggaccaaaaatgagttctaagcttgttggaaaagctcaagggttgtatgcatctgcatcaaaggatg |
3745845 |
T |
|
| Q |
201 |
agtttagtttgttcatggctatgacttttgctttcattgaaggaaagtataatggtagtactattactatcttggggagaaattctgctcttaataaggt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3745844 |
agtttagtttgttcatggctatgacttttgctttcattgaaggaaagtataatgggagtactattactatcttggggagaaattctgctcttaataaggt |
3745745 |
T |
|
| Q |
301 |
tagggaaatgcctattgttggtggtaccggacgtttt |
337 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3745744 |
tagggaaatgcctattgttggtggtaccggacgtttt |
3745708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 3751861 - 3751536
Alignment:
| Q |
1 |
tttcagattcttttggcatgacatcatgagtggaaaaaaccctacttcaattacagttgtaccactaccattgaagctaaatacaactacttcttttggg |
100 |
Q |
| |
|
||||||||||| ||||||||| ||| ||||||| ||||| || ||| |||||||| |||| |||| ||||||||||||||| ||||| |||| |||||| |
|
|
| T |
3751861 |
tttcagattctattggcatgatatcttgagtgggaaaaatcccactgcaattacaattgttccaccaccattgaagctaaacacaaccacttattttggt |
3751762 |
T |
|
| Q |
101 |
ttagtcaacattattgacaaccctttaactttaggaccaaaaatgagttctaagcttgttggaaaagctcaagggttgtatgcatctgcatcaaaggatg |
200 |
Q |
| |
|
| ||||||||| |||| ||||||| ||| |||||||| || ||||||||||||||||||||||||||||||| || ||||||||||||||| | |||| |
|
|
| T |
3751761 |
tcagtcaacatgtttgatgaccctttgactataggaccacaattgagttctaagcttgttggaaaagctcaaggtttctatgcatctgcatcacaagatg |
3751662 |
T |
|
| Q |
201 |
agtttagtttgttcatggctatgacttttgctttcattgaaggaaagtataatggtagtactattactatcttggggagaaattctgctcttaataaggt |
300 |
Q |
| |
|
| ||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| | ||||||||| |
|
|
| T |
3751661 |
attttggttttctcatggctatgaactttgctttcattgaaggaaagtataatggtagtacaattactatcttggggaggaattctggtattaataaggc |
3751562 |
T |
|
| Q |
301 |
tagggaaatgcctattgttggtggta |
326 |
Q |
| |
|
||| || ||||||||| ||||||||| |
|
|
| T |
3751561 |
tagagagatgcctattattggtggta |
3751536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 93 - 324
Target Start/End: Complemental strand, 3762748 - 3762517
Alignment:
| Q |
93 |
cttttgggttagtcaacattattgacaaccctttaactttaggaccaaaaatgagttctaagcttgttggaaaagctcaagggttgtatgcatctgcatc |
192 |
Q |
| |
|
||||||| |||||| ||| |||||||||||||| ||||||||||| || |||||||||| |||||||||| ||||||||| || |||||||||||||| |
|
|
| T |
3762748 |
cttttggtttagtccgcatgattgacaaccctttgactttaggacccgaactgagttctaaacttgttggaagagctcaaggattctatgcatctgcatc |
3762649 |
T |
|
| Q |
193 |
aaaggatgagtttagtttgttcatggctatgacttttgctttcattgaaggaaagtataatggtagtactattactatcttggggagaaattctgctctt |
292 |
Q |
| |
|
| |||| || | |||| | ||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||| |
|
|
| T |
3762648 |
acaggaagaaataggttttcttatgacagtgaattttgctttcattgaaggaaagtataatggtagtactattactatcttggggaggaatccagctctt |
3762549 |
T |
|
| Q |
293 |
aataaggttagggaaatgcctattgttggtgg |
324 |
Q |
| |
|
|||||||||||||| |||||| |||||||||| |
|
|
| T |
3762548 |
aataaggttagggagatgcctgttgttggtgg |
3762517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 84 - 326
Target Start/End: Complemental strand, 3776838 - 3776596
Alignment:
| Q |
84 |
caactacttcttttgggttagtcaacattattgacaaccctttaactttaggaccaaaaatgagttctaagcttgttggaaaagctcaagggttgtatgc |
183 |
Q |
| |
|
|||| |||| |||||| ||||| | ||| |||||||||||||||||||||||||| || |||||||||| |||||||| | ||||||||| || ||||| |
|
|
| T |
3776838 |
caaccactttttttggtttagttagcatgattgacaaccctttaactttaggacccgaattgagttctaaacttgttggtagagctcaaggattctatgc |
3776739 |
T |
|
| Q |
184 |
atctgcatcaaaggatgagtttagtttgttcatggctatgacttttgctttcattgaaggaaagtataatggtagtactattactatcttggggagaaat |
283 |
Q |
| |
|
|||||| ||| |||| || | |||| | ||| | |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
3776738 |
atctgcttcacaggaagaaataggttttcttatgacaatgaattttgctttcattgaaggaaagtataatggtagtaccattactatcttggggaggaat |
3776639 |
T |
|
| Q |
284 |
tctgctcttaataaggttagggaaatgcctattgttggtggta |
326 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
3776638 |
catgctcgtaataaggttagggaaatgcctgttgttggtggta |
3776596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 3781234 - 3780909
Alignment:
| Q |
1 |
tttcagattcttttggcatgacatcatgagtggaaaaaaccctacttcaattacagttgtaccactaccattgaagctaaatacaactacttcttttggg |
100 |
Q |
| |
|
||||||||||| |||||||||| || ||||||||||||| || ||||| || || || | |||| | ||| || |||| |||| || ||||||| |
|
|
| T |
3781234 |
tttcagattctattggcatgacgtcttgagtggaaaaaatccaacttcggttgcaattattccaccatcatcaaaagtaaactcaaccaccgcttttggt |
3781135 |
T |
|
| Q |
101 |
ttagtcaacattattgacaaccctttaactttaggaccaaaaatgagttctaagcttgttggaaaagctcaagggttgtatgcatctgcatcaaaggatg |
200 |
Q |
| |
|
|| || ||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||| || ||||||||||| ||| | || | |
|
|
| T |
3781134 |
ttggttaacatgattgacaaccctttaactttaggaccagaactgagttctaagcttgttggaagagctcaaggattctatgcatctgcttcacaagaag |
3781035 |
T |
|
| Q |
201 |
agtttagtttgttcatggctatgacttttgctttcattgaaggaaagtataatggtagtactattactatcttggggagaaattctgctcttaataaggt |
300 |
Q |
| |
|
| | |||| | ||| | |||| ||||||||||||||||||||||||||||||||||||| |||||||| | ||||| ||| |||| ||||| ||| |
|
|
| T |
3781034 |
aactaggttttcttatgacaatgaattttgctttcattgaaggaaagtataatggtagtactcttactatcgtagggaggaatcctgccattaatttggt |
3780935 |
T |
|
| Q |
301 |
tagggaaatgcctattgttggtggta |
326 |
Q |
| |
|
|||||| |||||| |||||||||||| |
|
|
| T |
3780934 |
tagggagatgcctgttgttggtggta |
3780909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 3755728 - 3755403
Alignment:
| Q |
1 |
tttcagattcttttggcatgacatcatgagtggaaaaaaccctacttcaattacagttgtaccactaccattgaagctaaatacaactacttcttttggg |
100 |
Q |
| |
|
||||||||||| ||||| ||||| ||||||||||||||||||||||| || ||||||| |||| |||| |||| ||||| |||| ||| | ||||| |
|
|
| T |
3755728 |
tttcagattctactggcacgacatagtgagtggaaaaaaccctacttcagttgcagttgtcccaccaccaatgaaactaaactcaaccactgcctttggt |
3755629 |
T |
|
| Q |
101 |
ttagtcaacattattgacaaccctttaactttaggaccaaaaatgagttctaagcttgttggaaaagctcaagggttgtatgcatctgcatcaaaggatg |
200 |
Q |
| |
|
| |||| ||| || |||||||||||||||||||||||| | ||| ||||||| ||||||||||||||||||| || ||||||||||||| || |||| |
|
|
| T |
3755628 |
tcagtccgcatgatcgacaaccctttaactttaggaccacagttgaattctaagattgttggaaaagctcaaggattctatgcatctgcatgcaaagatg |
3755529 |
T |
|
| Q |
201 |
agtttagtttgttcatggctatgacttttgctttcattgaaggaaagtataatggtagtactattactatcttggggagaaattctgctcttaataaggt |
300 |
Q |
| |
|
| || |||| | |||||||||| ||||||||| | |||||||||||||||||| ||||| ||||||| ||||| || ||| ||| | || |||| || |
|
|
| T |
3755528 |
aagttgatttgcttatggctatgaattttgcttttactgaaggaaagtataatggaagtacacttactatattgggaaggaatgctgtttttcataaagt |
3755429 |
T |
|
| Q |
301 |
tagggaaatgcctattgttggtggta |
326 |
Q |
| |
|
||| || |||||| | ||||||||| |
|
|
| T |
3755428 |
tagagagatgcctgtgattggtggta |
3755403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 116 - 326
Target Start/End: Complemental strand, 3767141 - 3766931
Alignment:
| Q |
116 |
gacaaccctttaactttaggaccaaaaatgagttctaagcttgttggaaaagctcaagggttgtatgcatctgcatcaaaggatgagtttagtttgttca |
215 |
Q |
| |
|
|||||||||||||||||||||||| | ||| ||||||| ||||||||||||||||||| || ||||||||||||| || ||||| || |||| | | |
|
|
| T |
3767141 |
gacaaccctttaactttaggaccacagttgaattctaagattgttggaaaagctcaaggattctatgcatctgcatgcaaagatgaagttgatttgctta |
3767042 |
T |
|
| Q |
216 |
tggctatgacttttgctttcattgaaggaaagtataatggtagtactattactatcttggggagaaattctgctcttaataaggttagggaaatgcctat |
315 |
Q |
| |
|
||||||||| ||||||||| | |||||||||||||||||| ||||| ||||||| ||||| || ||| ||| | || |||| ||||| || |||||| | |
|
|
| T |
3767041 |
tggctatgaattttgcttttactgaaggaaagtataatggaagtacacttactatattgggaaggaatgctgtttttcataaagttagagagatgcctgt |
3766942 |
T |
|
| Q |
316 |
tgttggtggta |
326 |
Q |
| |
|
||||||||| |
|
|
| T |
3766941 |
gattggtggta |
3766931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 28 - 177
Target Start/End: Complemental strand, 3771459 - 3771310
Alignment:
| Q |
28 |
gagtggaaaaaaccctacttcaattacagttgtaccactaccattgaagctaaatacaactacttcttttgggttagtcaacattattgacaacccttta |
127 |
Q |
| |
|
|||||||||||||||| |||| | | | |||| |||| |||| |||| ||||| ||||| ||| ||||||| | |||| ||| || |||||||||||| |
|
|
| T |
3771459 |
gagtggaaaaaaccctccttcggtaataattgttccaccaccaatgaaactaaacacaaccactgcttttggttcagtccgcatgatcgacaacccttta |
3771360 |
T |
|
| Q |
128 |
actttaggaccaaaaatgagttctaagcttgttggaaaagctcaagggtt |
177 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||| |||||||||| |
|
|
| T |
3771359 |
actttaggaccagaactgagttctaagcttgttggaaaatctcaagggtt |
3771310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 7 - 326
Target Start/End: Original strand, 25985288 - 25985604
Alignment:
| Q |
7 |
attcttttggcatgacatcatgagtggaaaaaaccctacttcaattacagttgtaccactaccattgaagctaaatacaactacttcttttgggttagtc |
106 |
Q |
| |
|
||||| |||||||||||| | |||||||| |||||| ||||||| || |||| |||| ||| ||||| ||| |||| ||| ||||||| ||||| |
|
|
| T |
25985288 |
attctattggcatgacatagttagtggaaacaacccttcttcaataccaattgttccaccacctttgaa---aaactcaaccactgcttttggtttagtt |
25985384 |
T |
|
| Q |
107 |
aacattattgacaaccctttaactttaggaccaaaaatgagttctaagcttgttggaaaagctcaagggttgtatgcatctgcatcaaaggatgagttta |
206 |
Q |
| |
|
||||| ||||| ||||||||||| |||||||| || ||||||| || | ||||||||||| ||||| || ||||| || ||||| | |||| | |
|
|
| T |
25985385 |
aacatgattgagaaccctttaaccttaggacctcaattgagttccaaattggttggaaaagcacaaggattctatgcctcaacatcacaaagtgaggtag |
25985484 |
T |
|
| Q |
207 |
gtttgttcatggctatgacttttgctttcattgaaggaaagtataatggtagtactattactatcttggggagaaattctgctcttaataaggttaggga |
306 |
Q |
| |
|
| |||||||||||| ||||||| | |||||||| ||||| |||||||| || || ||||| |||||||| ||| ||| | | ||||||||||||| |
|
|
| T |
25985485 |
accttatcatggctatgaattttgctataattgaagggaagtacaatggtagcaccatcactattttggggaggaatcctgtttctgataaggttaggga |
25985584 |
T |
|
| Q |
307 |
aatgcctattgttggtggta |
326 |
Q |
| |
|
||||||||| ||||||||| |
|
|
| T |
25985585 |
aatgcctataattggtggta |
25985604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 777 times since January 2019
Visitors: 3656