View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0538_low_27 (Length: 338)

Name: NF0538_low_27
Description: NF0538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0538_low_27
NF0538_low_27
[»] chr5 (5 HSPs)
chr5 (2-248)||(31734742-31734988)
chr5 (2-178)||(31684363-31684539)
chr5 (19-179)||(31711353-31711513)
chr5 (19-179)||(31702919-31703079)
chr5 (2-181)||(31714305-31714484)
[»] chr4 (1 HSPs)
chr4 (40-138)||(30570360-30570458)


Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 2 - 248
Target Start/End: Original strand, 31734742 - 31734988
Alignment:
Q  2 gaggaggagcagagactatggcaaagacttttgccaaatcattcccacaaatggagtgcattgtatttgatcttccacatgttgttgatggtttgcaagg 101  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  31734742 gaggaggaacagggactatggcaaagacttttgccaaatcattcccacaaatggagtgcattgtgtttgatctaccacatgttgttgatggtttgcaagg 31734841  T
Q  102 aagtgagaatctaagctatgttggtggagacatgtttaaagaaattccgccaaccgatgcaattctgttgaaggtaaagtattaagataagtactccata 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31734842 aagtgagaatctaagctatgttggtggagacatgtttaaagaaattccgccaaccgatgcaattctgttgaaggtaaagtattaagataagtactccata 31734941  T
Q  202 gaaaatactctaatgttaagaatatgtttgtgtttaagccatgttat 248  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  31734942 gaaaatactctaatgttaagaatatgtttgtgtttaagccatgttat 31734988  T

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Target: chr5; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 2 - 178
Target Start/End: Original strand, 31684363 - 31684539
Alignment:
Q  2 gaggaggagcagagactatggcaaagacttttgccaaatcattcccacaaatggagtgcattgtatttgatcttccacatgttgttgatggtttgcaagg 101  Q
    |||||||  ||| ||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  31684363 gaggaggtacagggaccatggcaaaaactcttgccaaatcattcccacaaatggagtgcattgtatttgatcttccacatgttgttgatggtttgctagg 31684462  T
Q  102 aagtgagaatctaagctatgttggtggagacatgtttaaagaaattccgccaaccgatgcaattctgttgaaggtaa 178  Q
    |||||| ||  ||| ||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||    
T  31684463 aagtgaaaacttaaactatgttggtggagacatgtttaaagaaattccgccaacagctgcaattttgttgaaggtaa 31684539  T

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Target: chr5; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 19 - 179
Target Start/End: Original strand, 31711353 - 31711513
Alignment:
Q  19 atggcaaagacttttgccaaatcattcccacaaatggagtgcattgtatttgatcttccacatgttgttgatggtttgcaaggaagtgagaatctaagct 118  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| || ||||| |    
T  31711353 atggcaaagactcttgtcaaatcattcccacaaatggagtgcattgtgtttgatcttccacatgttgttgatggcttgcaaggaagtgaaaagctaagat 31711452  T
Q  119 atgttggtggagacatgtttaaagaaattccgccaaccgatgcaattctgttgaaggtaaa 179  Q
    |||||||||||||||||||||| |||||||| ||| | ||||||||| |||||||||||||    
T  31711453 atgttggtggagacatgtttaaggaaattccaccagcagatgcaattttgttgaaggtaaa 31711513  T

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Target: chr5; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 19 - 179
Target Start/End: Original strand, 31702919 - 31703079
Alignment:
Q  19 atggcaaagacttttgccaaatcattcccacaaatggagtgcattgtatttgatcttccacatgttgttgatggtttgcaaggaagtgagaatctaagct 118  Q
    ||||||||| |  |||| ||||||||||||||||||||||  | |||||||||||| ||||||||||||||||| |||||||| ||||||||||||| ||    
T  31702919 atggcaaaggcccttgctaaatcattcccacaaatggagtttagtgtatttgatctaccacatgttgttgatggcttgcaaggtagtgagaatctaaact 31703018  T
Q  119 atgttggtggagacatgtttaaagaaattccgccaaccgatgcaattctgttgaaggtaaa 179  Q
    ||||||||||||||||||||||||||||||| ||||| || || ||| |||||||||||||    
T  31703019 atgttggtggagacatgtttaaagaaattcctccaacagacgccattttgttgaaggtaaa 31703079  T

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Target: chr5; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 2 - 181
Target Start/End: Original strand, 31714305 - 31714484
Alignment:
Q  2 gaggaggagcagagactatggcaaagacttttgccaaatcattcccacaaatggagtgcattgtatttgatcttccacatgttgttgatggtttgcaagg 101  Q
    |||||||  ||| ||| ||||||||| || |||||||||||||||||||| | ||||||| ||| |||||||||||||||||||||||||| ||||||||    
T  31714305 gaggaggcacagggaccatggcaaaggctcttgccaaatcattcccacaattagagtgcactgtgtttgatcttccacatgttgttgatggcttgcaagg 31714404  T
Q  102 aagtgagaatctaagctatgttggtggagacatgtttaaagaaattccgccaaccgatgcaattctgttgaaggtaaagt 181  Q
    | |||| ||  ||| ||||||||||||||| ||||||||   |||||| ||| | ||||| ||| |||||||||||||||    
T  31714405 aggtgataacttaaactatgttggtggagatatgtttaagagaattcctccagctgatgctattttgttgaaggtaaagt 31714484  T

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Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 40 - 138
Target Start/End: Original strand, 30570360 - 30570458
Alignment:
Q  40 tcattcccacaaatggagtgcattgtatttgatcttccacatgttgttgatggtttgcaaggaagtgagaatctaagctatgttggtggagacatgttt 138  Q
    ||||||||| | || |||||||||||||||||||||||||||||||||||||| || ||||||||||| ||  |||  |||||||| || |||||||||    
T  30570360 tcattcccaaacattgagtgcattgtatttgatcttccacatgttgttgatggcttacaaggaagtgaaaacttaaaatatgttggaggtgacatgttt 30570458  T

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