View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0538_low_3 (Length: 680)
Name: NF0538_low_3
Description: NF0538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0538_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 482; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 12 - 589
Target Start/End: Complemental strand, 33369182 - 33368600
Alignment:
| Q |
12 |
atgaaggggatgtagcaacgccatataaataagaatttcataacgtgctaaaataaaaatatattcagagnnnnnnnnnntcccacctgattttttatat |
111 |
Q |
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| T |
33369182 |
atgaaggggatgtagcaacgccatataaataagaatttcataacgtgctaaaataaaaatatattcagagaaaaaaaaaatcccacctgattttttatat |
33369083 |
T |
|
| Q |
112 |
at--gtataaaaagtgaaaactgacttaagatagtgtatagttgtccccaatgatatggcattttgataatctttctt--acccacggggtcaccatcat |
207 |
Q |
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|| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
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| T |
33369082 |
atatgtataaaaagtgaaaactgacttgagatagtgtatagttgtctccaatgatatggcattttgataatctttcttttacccaccgggtcaccatcat |
33368983 |
T |
|
| Q |
208 |
ctcatacattattcacatgatcaatgacctcagcattcctacatgattaatataattgccaacacttagttaaacctaattttatatatgatcacattag |
307 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33368982 |
ctcatacattattcacatgattaatgacctcagcattcctacatgattaatataattgccaacacttagttaaacctaattttatatatgatcacattag |
33368883 |
T |
|
| Q |
308 |
tagtgaccatttcttaaataatatctaggtctagtaa-ctaatttgtatatatattataccttctatttgttatcacaagtttattnnnnnnncgcacaa |
406 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
33368882 |
tagtgaccatttcttaaataatatctaggtctagtaaactaatttgtatatatattataccttctatttgttatcacaagtttattaaaaaaacgcacaa |
33368783 |
T |
|
| Q |
407 |
ctcaagtccttactctatcctttaaattttgtaaaaataaaaacatcagtacacaaccgtttgaataatttgtatttattatacttcttctatttggttt |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33368782 |
ctcaagtccttactctatcctttaaattttgtaaaaataaaaacatcagtacacaaccgtttgaataatttgtatttattatacttcttctatttggttt |
33368683 |
T |
|
| Q |
507 |
tggacagtttcccatgtgtttaggaagataaattcgtttcttttggagttacttttagatgttttacttggtgggtctaatcc |
589 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33368682 |
tggacagtttcccatgtgtttaggaagataaatttgtttcttttggagttacttttagatgttttacttggtgggtctaatcc |
33368600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 608 - 651
Target Start/End: Complemental strand, 33367573 - 33367530
Alignment:
| Q |
608 |
acaagaacaagaagaaaaattaaagtcaatcgctatcaaatgtg |
651 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33367573 |
acaagaacaagaagaaaaattaaagtcaatagctatcaaatgtg |
33367530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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