View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0538_low_31 (Length: 335)
Name: NF0538_low_31
Description: NF0538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0538_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 30906802 - 30907106
Alignment:
| Q |
1 |
tatgaaccgtgtcccttccaaaagaaacaactcccacccaaattagaccttgtcgaaagccgaactaaaagcaattaccatgaaaagattaccacttttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30906802 |
tatgaaccgtgtcccttccaaaagaaacaactcccacccaaattagaccttgtcgaaagccgaactaaaagcaattaccatgaaaagattaccacttttg |
30906901 |
T |
|
| Q |
101 |
aaggagcaaaacttccccacaccttagccaaaagactatacctatctgacaccaccaacaaataagatcgaagtgaatatatatttataaagatgagaaa |
200 |
Q |
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| T |
30906902 |
aaggagcaaaacttccccacaccttagccaaaagactatccctatctgacaccaccaacaaatagga-agaagagaatatatatttacaaagatgagaaa |
30907000 |
T |
|
| Q |
201 |
gaatttggttcaccaaaaatatacctcgagagtttgcacacacaatcaatcatctttcaacatcaatagttggaccaacactactaactccaacaaactt |
300 |
Q |
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|||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||| |||||| |
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| T |
30907001 |
gaatttagtttaccaaaaatatacctcgagagtttgcacacacaaccaatcatctttcgacatcaatagttagaccaacactactaactccaataaactt |
30907100 |
T |
|
| Q |
301 |
tggtag |
306 |
Q |
| |
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|||||| |
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| T |
30907101 |
tggtag |
30907106 |
T |
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