View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0538_low_32 (Length: 329)
Name: NF0538_low_32
Description: NF0538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0538_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 10187472 - 10187772
Alignment:
| Q |
1 |
ccgagatgtacgttctactcctgtggtttttattctacttttttctgcctgcattttgttctttattaagcattctgcatgttgcctcggggcccttaaa |
100 |
Q |
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| T |
10187472 |
ccgagatgtacgttctactcctgtggtttttattctacttttttctgcctgcattttgttctttattaagcattctgcatgttgcctcggggcccttaaa |
10187571 |
T |
|
| Q |
101 |
aaatgttggtgttctgtgcgctaatccatggtcgtggttagagaaagttaatttttcgtctatcttctgaatcaccttttattggcttggtattttacat |
200 |
Q |
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| T |
10187572 |
aaatgttggtgttctgtgcgctaatccatggtcgtggttagagaaagttaatttttcgtctatcttctgaatcaccttttattggcttggtattttacat |
10187671 |
T |
|
| Q |
201 |
gtttaatgaaattggcagatagtagataacgtgctggatataattgacagaattgacaaccccattattgataaaatacaaaggtatgtttcacaggttc |
300 |
Q |
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| T |
10187672 |
gtttaatgaaactggcagatagtagatgacgtgcgggatataattgacagaattgacaaccccattattgataaaatacaaaggtatgtttctcagtttc |
10187771 |
T |
|
| Q |
301 |
t |
301 |
Q |
| |
|
| |
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| T |
10187772 |
t |
10187772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 42 - 220
Target Start/End: Original strand, 28933230 - 28933407
Alignment:
| Q |
42 |
tttctgcctgcattttgttctttattaagcattctgcatgttgcctcggggcccttaaaaaatgttggtgttctgtgcgctaatccatggtcgtggttag |
141 |
Q |
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| T |
28933230 |
tttctacctgcattttgttctatattatgtattctgcaggtttcctcaggccccataaaaaatattggtgttgtgtgc--taattcatgattgtggatag |
28933327 |
T |
|
| Q |
142 |
agaaagttaatttt-tcgtctatcttctgaatcaccttttattggcttggtattttacatgtttaatgaaattggcagat |
220 |
Q |
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| || || ||||| || |||| ||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
28933328 |
aaaatttttattttgtcatctaactttcgaatcaccttttattggcctggtattttacatgtctaatgaaattggcagat |
28933407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 129 - 280
Target Start/End: Complemental strand, 35120731 - 35120580
Alignment:
| Q |
129 |
tggtcgtggttagagaaagttaatttttcgtctatcttctgaatcaccttttattggcttggtattttacatgtttaatgaaattggcagatagtagata |
228 |
Q |
| |
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||||| ||| |||||||| | ||||||| |||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
35120731 |
tggtcatggatagagaaaatatatttttcatctaacttctgaatcacctttttttggcttggtattttacatttttaatgaaattggcagatggtagatg |
35120632 |
T |
|
| Q |
229 |
acgtgctggatataattgacagaattgacaaccccattattgataaaataca |
280 |
Q |
| |
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|| ||| ||||| |||||| | || |||||||||||||||| | |||||||| |
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| T |
35120631 |
acttgcgggatagaattgaaacaagtgacaaccccattattaacaaaataca |
35120580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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