View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0538_low_33 (Length: 323)
Name: NF0538_low_33
Description: NF0538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0538_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 40611759 - 40611686
Alignment:
| Q |
29 |
aagaatataatggggaagaagggaaattggttttctacagtgaagaaagctctcagccctgactcaaaggtatc |
102 |
Q |
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| T |
40611759 |
aagaagataatggggaagaagggaaattggttttctacagtgaagaaagctctcagccctgactcaaaggtatc |
40611686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 176 - 230
Target Start/End: Complemental strand, 40611612 - 40611558
Alignment:
| Q |
176 |
gttgtttcagaaatcaagtaaatcaaaaaagaaatggtttgggaagcaaaaattg |
230 |
Q |
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| T |
40611612 |
gttgtttcagaaatcaagtaaatcaaaaaagaaatggtttgggaagcaaaaattg |
40611558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 28707655 - 28707703
Alignment:
| Q |
183 |
cagaaatcaagtaaatcaaaaaagaaatggtttgggaagcaaaaattga |
231 |
Q |
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| T |
28707655 |
cagaattcaagtggatcaaagaagaaatggtttgggaagaaaaaattga |
28707703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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