View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0538_low_4 (Length: 605)
Name: NF0538_low_4
Description: NF0538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0538_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 129 - 484
Target Start/End: Original strand, 30766885 - 30767240
Alignment:
| Q |
129 |
gacttccgaccgacctaaccattaaaaatataatcgtattagcatatccaatctaattcaaaccacggtaacaaagttgaaaaattatataaaaaataac |
228 |
Q |
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| T |
30766885 |
gacttccgaccgacctaaccattacaaatataatcgtattagcatatccaatctaatgcaaaccacggtaacaaagttgaaaaattatataaaaaataac |
30766984 |
T |
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| Q |
229 |
caaaactgaacatatcaacttttttcgttggattgtaaaataaaaaaccttattcttttctaatattggagaaaaatattctaaatcttactatattcta |
328 |
Q |
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| T |
30766985 |
caaaactgaacatatcaacttttttcgttggattgtaaaataaaaaaccttattcttttctaatattggagaaaaatattctaaatcttactatattcta |
30767084 |
T |
|
| Q |
329 |
ttttttctgaagcatgattcaccatggaccgacatggtataataacttatggttttcacttctccagttatcaaatgaactgtgttattatcagcattca |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
30767085 |
ttttttctgaagcatgattcaccatggaccgacatggtataataacttatggttttcacttcaccagttatcaaatgaactgtgttattatcagcattca |
30767184 |
T |
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| Q |
429 |
tcaaacagtaaggactataatccaagaattagatacattcatacatatgtatgcag |
484 |
Q |
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| T |
30767185 |
tcaaacagtaaggactataatccaagaattagatacattcatacgtatgtatgcag |
30767240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 11 - 127
Target Start/End: Original strand, 30766730 - 30766846
Alignment:
| Q |
11 |
cagagacaaatctaacaaaccactaaacatattttatcataagttcacaatgccaaaatgcatagaaatgtcgatcatattttttagtagatagacgaaa |
110 |
Q |
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| T |
30766730 |
cagagacaaatctaacaaaccactaaacatattttatcataagttcacaatgccaaaatgcaaagaaatgtcaatccaattttttagtagatagacgaaa |
30766829 |
T |
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| Q |
111 |
tgtcaatttatcattga |
127 |
Q |
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| T |
30766830 |
tatcaatttaccattga |
30766846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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