View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0538_low_45 (Length: 287)
Name: NF0538_low_45
Description: NF0538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0538_low_45 |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 43469916 - 43470179
Alignment:
| Q |
1 |
ctaagtgtgttgtttgttactttgagcatgttctccaactcaatgcacatgcattcacatgatgaattcttcttctcacatcatatacaccaaacaaaac |
100 |
Q |
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| T |
43469916 |
ctaagtgtgttgtttgttactttgagcatgttctccaactcaatgcacatgcattcacatgatgaattcttcttctcacatcatatacaccaaacaaaac |
43470015 |
T |
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| Q |
101 |
ctctctatacaacaacctttcatcacaaacacacacctcatctaattaaaccacaccctggattattcctatacaactttccaaattcattgtatttaat |
200 |
Q |
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| T |
43470016 |
ctctctatacaacaacctttcatcacaaacacacacctcatctaattaaaccacaccctggattattcctatacaactttccaaattcattgtatttaat |
43470115 |
T |
|
| Q |
201 |
ttaattacaaatccatcactctccttccagctcaataaacgtggcaacgtggcataaaacatgt |
264 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43470116 |
ttaattacaaatccatcactctccttccagctcaataaacgtggcaacgtggcataaaacatgt |
43470179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 209 - 264
Target Start/End: Complemental strand, 10642645 - 10642590
Alignment:
| Q |
209 |
aaatccatcactctccttccagctcaataaacgtggcaacgtggcataaaacatgt |
264 |
Q |
| |
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| T |
10642645 |
aaatccatcactctccatccagttcaataaacgtggcaacgtagcgtaaaacatgt |
10642590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 259
Target Start/End: Original strand, 32713193 - 32713243
Alignment:
| Q |
209 |
aaatccatcactctccttccagctcaataaacgtggcaacgtggcataaaa |
259 |
Q |
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|||||||||||||||| ||||| ||||||||| ||||||||| || ||||| |
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| T |
32713193 |
aaatccatcactctccatccagttcaataaacatggcaacgtagcgtaaaa |
32713243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 209 - 264
Target Start/End: Original strand, 23924004 - 23924059
Alignment:
| Q |
209 |
aaatccatcactctccttccagctcaataaacgtggcaacgtggcataaaacatgt |
264 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||||| || |||||||||| |
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|
| T |
23924004 |
aaatccatcactctccatccagttcaataaacgtggcaacgtagcgtaaaacatgt |
23924059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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