View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0538_low_48 (Length: 279)
Name: NF0538_low_48
Description: NF0538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0538_low_48 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 168; Significance: 4e-90; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 30 - 245
Target Start/End: Original strand, 23861073 - 23861288
Alignment:
| Q |
30 |
acatcatcactagaaatcaagcacaaacaattccggaaaacactcaagtgcaaagtagatgaatctattgctctataatcataatcaggtagcaaaactt |
129 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
23861073 |
acatcattactagaaatccagcacaaacaattcctgaaaacactcaagtgcaaagtacgtgaatctattgctctataatcataatcaggtagcaaaactt |
23861172 |
T |
|
| Q |
130 |
ttttataagattcgtttcccaagtcaagagaagcaataaaactttgacctttactataatctttagaagccaaccaattaatcgtgtcattcacatattt |
229 |
Q |
| |
|
|||||||||| ||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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|
| T |
23861173 |
ttttataagactcgtttcccaaatcaaaagaagcaataaaacgttgacctttactataatctttagaagccaaccaattaatcgcgccattcacatattt |
23861272 |
T |
|
| Q |
230 |
tcccgatctctgctcc |
245 |
Q |
| |
|
||||||| |||||||| |
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|
| T |
23861273 |
tcccgatttctgctcc |
23861288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 30 - 245
Target Start/End: Original strand, 23814140 - 23814355
Alignment:
| Q |
30 |
acatcatcactagaaatcaagcacaaacaattccggaaaacactcaagtgcaaagtagatgaatctattgctctataatcataatcaggtagcaaaactt |
129 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
23814140 |
acatcattactagaaatccagcacaaacaattcccgaaaacactcaagtgcaaagtaagtgaatctattgctctataatcacaatcaggtagcaaaactt |
23814239 |
T |
|
| Q |
130 |
ttttataagattcgtttcccaagtcaagagaagcaataaaactttgacctttactataatctttagaagccaaccaattaatcgtgtcattcacatattt |
229 |
Q |
| |
|
|||||||||| ||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
23814240 |
ttttataagactcgtttcccaaatcaaaagaagcaataaaacgttgacctttactataatctttagaagccaaccaattaatcgtgccattcacatattt |
23814339 |
T |
|
| Q |
230 |
tcccgatctctgctcc |
245 |
Q |
| |
|
||| ||| |||||||| |
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|
| T |
23814340 |
tcctgatttctgctcc |
23814355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 30 - 245
Target Start/End: Original strand, 23769693 - 23769908
Alignment:
| Q |
30 |
acatcatcactagaaatcaagcacaaacaattccggaaaacactcaagtgcaaagtagatgaatctattgctctataatcataatcaggtagcaaaactt |
129 |
Q |
| |
|
||||||| |||| ||||| ||||||||||||||| |||||||||||||||||||||| |||| | ||| |||||||||||||||| ||||||||||||| |
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|
| T |
23769693 |
acatcattactacaaatccagcacaaacaattcccgaaaacactcaagtgcaaagtacgtgaaccaatttctctataatcataatccggtagcaaaactt |
23769792 |
T |
|
| Q |
130 |
ttttataagattcgtttcccaagtcaagagaagcaataaaactttgacctttactataatctttagaagccaaccaattaatcgtgtcattcacatattt |
229 |
Q |
| |
|
|||||||||| ||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
23769793 |
ttttataagactcgtttcccaaatcaaaagaagcaataaaacgttgacctttactataatctttagaagccaaccaattaatcgtgccattcacatattt |
23769892 |
T |
|
| Q |
230 |
tcccgatctctgctcc |
245 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
23769893 |
tcccgatttctgctcc |
23769908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 30 - 245
Target Start/End: Original strand, 23819541 - 23819756
Alignment:
| Q |
30 |
acatcatcactagaaatcaagcacaaacaattccggaaaacactcaagtgcaaagtagatgaatctattgctctataatcataatcaggtagcaaaactt |
129 |
Q |
| |
|
||||||| |||| ||||| ||||||||||||||| |||||||||||||||||||||| |||| | ||| |||||||||||||||| ||||||||||||| |
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|
| T |
23819541 |
acatcattactacaaatccagcacaaacaattcccgaaaacactcaagtgcaaagtacgtgaaccaatttctctataatcataatccggtagcaaaactt |
23819640 |
T |
|
| Q |
130 |
ttttataagattcgtttcccaagtcaagagaagcaataaaactttgacctttactataatctttagaagccaaccaattaatcgtgtcattcacatattt |
229 |
Q |
| |
|
|||||||||| ||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
23819641 |
ttttataagactcgtttcccaaatcaaaagaagcaataaaacgttgacctttactataatctttagaagccaaccaattaatcgtgccattcacatattt |
23819740 |
T |
|
| Q |
230 |
tcccgatctctgctcc |
245 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
23819741 |
tcccgatttctgctcc |
23819756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 30 - 245
Target Start/End: Original strand, 23764307 - 23764522
Alignment:
| Q |
30 |
acatcatcactagaaatcaagcacaaacaattccggaaaacactcaagtgcaaagtagatgaatctattgctctataatcataatcaggtagcaaaactt |
129 |
Q |
| |
|
||||||| |||| ||||| ||||||||||||||||||||||| |||||||||||||| |||||| | | |||||||||||||||| ||||||||||||| |
|
|
| T |
23764307 |
acatcattactacaaatccagcacaaacaattccggaaaacaatcaagtgcaaagtacgtgaatcaaattctctataatcataatccggtagcaaaactt |
23764406 |
T |
|
| Q |
130 |
ttttataagattcgtttcccaagtcaagagaagcaataaaactttgacctttactataatctttagaagccaaccaattaatcgtgtcattcacatattt |
229 |
Q |
| |
|
|||||||||| ||||||||||| |||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||| | | ||||||||||||| |
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|
| T |
23764407 |
ttttataagactcgtttcccaaatcaaaagaagcaataaaacattgacctttaccataatctttagaagccaaccaattaaaagcgccattcacatattt |
23764506 |
T |
|
| Q |
230 |
tcccgatctctgctcc |
245 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
23764507 |
tcccgatttctgctcc |
23764522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 30 - 149
Target Start/End: Complemental strand, 23732171 - 23732051
Alignment:
| Q |
30 |
acatcatcactagaaatcaagcacaaacaattccggaaaacactcaagtgcaaagtagatgaatctattgctctataatcataatc-aggtagcaaaact |
128 |
Q |
| |
|
||||||| |||||||||| | ||||||||||||| ||||||||||||||| |||| | |||||||||||| ||| ||||||||||| ||| ||||||||| |
|
|
| T |
23732171 |
acatcattactagaaatccaccacaaacaattcctgaaaacactcaagtggaaagaacatgaatctattgttctttaatcataatcaaggaagcaaaact |
23732072 |
T |
|
| Q |
129 |
tttttataagattcgtttccc |
149 |
Q |
| |
|
||||||||||| ||||||||| |
|
|
| T |
23732071 |
tttttataagactcgtttccc |
23732051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 30 - 213
Target Start/End: Complemental strand, 23673738 - 23673555
Alignment:
| Q |
30 |
acatcatcactagaaatcaagcacaaacaattccggaaaacactcaagtgcaaagtagatgaatctattgctctataatcataatcaggtagcaaaactt |
129 |
Q |
| |
|
||||||| |||||| ||| | || ||||| || | || |||||||| | ||||||| ||| ||| ||| ||||||||||||||| |||| |||||||| |
|
|
| T |
23673738 |
acatcattactagacatccaccaaaaacacttgctgacaacactcaggagcaaagttcgtgattctgttgttctataatcataatctggtaacaaaactt |
23673639 |
T |
|
| Q |
130 |
ttttataagattcgtttcccaagtcaagagaagcaataaaactttgacctttactataatctttagaagccaaccaattaatcg |
213 |
Q |
| |
|
|||||||||| ||| ||||||| |||| ||||| ||||||| ||||| |||||||| ||| ||||||||||||||||| |||| |
|
|
| T |
23673638 |
ttttataagactcgcttcccaaatcaaaagaagaaataaaatgttgacttttactatgatcattagaagccaaccaattgatcg |
23673555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 110 - 245
Target Start/End: Original strand, 23774201 - 23774335
Alignment:
| Q |
110 |
ataatcaggtagcaaaacttttttataagattcgttt-cccaagtcaagagaagcaataaaactttgacctttactataatctttagaagccaaccaatt |
208 |
Q |
| |
|
|||||| |||| |||||||||||| ||||| | |||| ||| | |||| |||| || |||||| ||||| ||||| |||||||||| ||||||||| | | |
|
|
| T |
23774201 |
ataatcgggtaccaaaacttttttttaagacttgttttccccaatcaaaagaacca-taaaacgttgacttttac-ataatctttaaaagccaacccaat |
23774298 |
T |
|
| Q |
209 |
aatcgtgtcattcacatattttcccgatctctgctcc |
245 |
Q |
| |
|
| ||| | |||||||||||||||||||| |||||||| |
|
|
| T |
23774299 |
attcgcgccattcacatattttcccgatttctgctcc |
23774335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 245
Target Start/End: Original strand, 23754168 - 23754300
Alignment:
| Q |
117 |
ggtagcaaaac-ttttttataag-attcgtttcccaagtcaagagaagc-aataaaactttgacctttactataatctttagaag-ccaaccaattaatc |
212 |
Q |
| |
|
||||||||||| |||||| |||| | ||||||||| | |||| |||| | |||||||| ||| ||||| || || ||||| |||| |||||||||| ||| |
|
|
| T |
23754168 |
ggtagcaaaactttttttttaagaactcgtttccccaatcaaaagaaacaaataaaacgttgcccttttctttattctttggaagcccaaccaatttatc |
23754267 |
T |
|
| Q |
213 |
gtgtcattcacatattttcccgatctctgctcc |
245 |
Q |
| |
|
||| ||||||||| |||||||||| | |||||| |
|
|
| T |
23754268 |
gtgccattcacattttttcccgatttttgctcc |
23754300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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