View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0538_low_52 (Length: 265)
Name: NF0538_low_52
Description: NF0538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0538_low_52 |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 28 - 242
Target Start/End: Original strand, 866797 - 867011
Alignment:
| Q |
28 |
gagatgaaggcaggttgtttgaaattgagaaggtcgaggatgtaggagatcatgaggccgatgattaaggtggttgtgacggtggtggaagagaggtcga |
127 |
Q |
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| T |
866797 |
gagatgaaggcaggttgtttgaaattgagaaggtcgaggatgtaggagatcatgaggccgatgattaaggtggttgtgacggtggtggaagagaggtcga |
866896 |
T |
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| Q |
128 |
ggatgaagagtatggcggggataagggaaattgcgattagggtattgtgggagaatgttgtagggtttttgagagatctggaggaggaggatgatgatgt |
227 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
866897 |
ggatgaagagtatggcggggataagggaaattgcgattagggtattgtgggagaatgttgtagggtttttgagagatctggaggaggaggaggatgatga |
866996 |
T |
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| Q |
228 |
ggttgaagatgatga |
242 |
Q |
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||||||||||||||| |
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| T |
866997 |
ggttgaagatgatga |
867011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 28 - 242
Target Start/End: Original strand, 1228074 - 1228288
Alignment:
| Q |
28 |
gagatgaaggcaggttgtttgaaattgagaaggtcgaggatgtaggagatcatgaggccgatgattaaggtggttgtgacggtggtggaagagaggtcga |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1228074 |
gagatgaaggcaggttgtttgaaattgagaaggtcgaggatgtaggagatcatgaggccgatgattaaggtggttgtgacggtggtggaagagaggtcga |
1228173 |
T |
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| Q |
128 |
ggatgaagagtatggcggggataagggaaattgcgattagggtattgtgggagaatgttgtagggtttttgagagatctggaggaggaggatgatgatgt |
227 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
1228174 |
ggatgaagagtatggcggggataagggaaattgcgattagggtattgtgggagaatgttgtagggtttttgagagatctggaggaggaggaggatgatga |
1228273 |
T |
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| Q |
228 |
ggttgaagatgatga |
242 |
Q |
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||||||||||||||| |
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| T |
1228274 |
ggttgaagatgatga |
1228288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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