View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0538_low_53 (Length: 264)
Name: NF0538_low_53
Description: NF0538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0538_low_53 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 30041979 - 30042234
Alignment:
| Q |
1 |
ataaaaaacaacctatcttaaatcgttaatcaaccacctagcacgcttaaagccccctcacttttcatagatatccaaaatatcattaaaatcaccaagg |
100 |
Q |
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| T |
30041979 |
ataaaaaacaacctatcttaaatcgttaatcaaccacctagcacgcttaaagccccctcacttttcatagatatccaaaatatcattaaaatcaccaagg |
30042078 |
T |
|
| Q |
101 |
atacactattgaagcgaagtaccacaagataaatttctcaaaaaatcccaagaattgcgtcttcgactcccttataggaatccataaaaacttgtaaatg |
200 |
Q |
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| T |
30042079 |
atacaccattgaagcgaagtaccacaagataaatttctcaaaaaatcccaagaattgcgtcttcgactcccttataggaatccataaaaacttgtaaatg |
30042178 |
T |
|
| Q |
201 |
ccatcttccttgactaggatcatggacttcaacattaatataatttgcagaataat |
256 |
Q |
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| T |
30042179 |
ccatctcccttgactaggatcacggacttcaacattaatataattttcagaataat |
30042234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 256
Target Start/End: Complemental strand, 21114761 - 21114686
Alignment:
| Q |
182 |
ccataaaaacttgtaaat-gccatcttccttgactaggatcatggacttcaacattaatataatttgcagaataat |
256 |
Q |
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|||||||||| ||||||| ||||| ||| |||||||||||| ||||||||||||||||| ||| |||||||||| |
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| T |
21114761 |
ccataaaaacctgtaaattgccatggccctcgactaggatcattgacttcaacattaatatgattagcagaataat |
21114686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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