View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0538_low_59 (Length: 251)
Name: NF0538_low_59
Description: NF0538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0538_low_59 |
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Alignment Details
Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 21 - 246
Target Start/End: Complemental strand, 22058031 - 22057805
Alignment:
| Q |
21 |
gaaagataacaaga-catgtttctaatctttactttataacattagaaagtacaaacaaaacattataacacaaaagtagcatgcttgatactttttaaa |
119 |
Q |
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|||||||||||| | |||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||| |
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| T |
22058031 |
gaaagataacaaaaacatgtttctaatctttacattacaacattagaaagtacaaacaaaacattataagacaatgatagcatgctagatactttttaaa |
22057932 |
T |
|
| Q |
120 |
tcatgtaacatgagactttacgatggttacatgtacttctcgtgccggttataacctatcaccctgatatctcgtattgtccaatcttttctttaatcat |
219 |
Q |
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||||||||||||||||||| ||||||| |||||||||||||||||||||||| || ||| ||||| ||||||| |||||||||||||||||| |||||| |
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| T |
22057931 |
tcatgtaacatgagactttccgatggtgacatgtacttctcgtgccggttattacttattaccctaatatctcacattgtccaatcttttcttcaatcat |
22057832 |
T |
|
| Q |
220 |
gaaataacaatttaaaggtcaatcaat |
246 |
Q |
| |
|
|||| |||||||||||||||||||||| |
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| T |
22057831 |
gaaacaacaatttaaaggtcaatcaat |
22057805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 14 - 138
Target Start/End: Complemental strand, 22078299 - 22078177
Alignment:
| Q |
14 |
atatgtagaaagataacaagacatgtttctaatctttactttataacattagaaagtacaaacaaaacattataacacaaaagtagcatgcttgat-act |
112 |
Q |
| |
|
|||||| | |||||||||| ||||||| ||||||||||||||| | |||| | |||||||||||||||| |||||||| ||||||||| ||| | |
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| T |
22078299 |
atatgtgggaagataacaaaacatgttcctaatctttactttacagcatt---atgtacaaacaaaacatttcaacacaaagatagcatgctagatcttt |
22078203 |
T |
|
| Q |
113 |
ttttaaatcatgtaacatgagacttt |
138 |
Q |
| |
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||||| |||||| ||||||||||||| |
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| T |
22078202 |
ttttatatcatgcaacatgagacttt |
22078177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 246
Target Start/End: Complemental strand, 22069016 - 22068972
Alignment:
| Q |
202 |
aatcttttctttaatcatgaaataacaatttaaaggtcaatcaat |
246 |
Q |
| |
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||||||||||| |||||||||| |||| ||||||||||||||||| |
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| T |
22069016 |
aatcttttcttcaatcatgaaacaacagtttaaaggtcaatcaat |
22068972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 63 - 135
Target Start/End: Original strand, 987132 - 987204
Alignment:
| Q |
63 |
tagaaagtacaaacaaaacattataacacaaaagtagcatgcttgatactttttaaatcatgtaacatgagac |
135 |
Q |
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|||||||||||| | |||||||| | ||||||| ||||||||| ||| ||||||| |||||| |||||||||| |
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| T |
987132 |
tagaaagtacaacctaaacattacagcacaaaaatagcatgctagatcctttttatatcatgcaacatgagac |
987204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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