View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0538_low_6 (Length: 582)
Name: NF0538_low_6
Description: NF0538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0538_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 501; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 46 - 574
Target Start/End: Complemental strand, 45209386 - 45208855
Alignment:
| Q |
46 |
acattaagcataactactatgagtattggcgcgtgaagattaccgtttttaatttcaattacagaaagaattactcagactggaacgtggttgttcaaca |
145 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45209386 |
acattaagtataactactatgagtattggcgcgtgaagattaccgtttttaatttcaattacagaaagaattactcagactggaacgtggttgttcaaca |
45209287 |
T |
|
| Q |
146 |
tccaaattttgataaattgacacaaattttcagttacaactacaaatcattagctccatatggatcaacaagtaagtttgtgtttgttcattatattcaa |
245 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45209286 |
tccaaattttgataaattgacacaaattttcagttacaactacaaatcattagctccatatggatcaacaagtaagtttgtgtttgttcattatattcaa |
45209187 |
T |
|
| Q |
246 |
-ggttttgctatcttatcaatataaa--tcaatgatgtactaatgaaaaactggtcttaacagatgatactgcaatgctttggggagttaaatttttcaa |
342 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
45209186 |
aggttttgctatcttatcaatataaaaatcaatgatgtactaatgaaaaactggtcttaacagatgatactgtaatgctttggggagttaaatttttcaa |
45209087 |
T |
|
| Q |
343 |
tgatgtactcatgcaagctggtcctaatggtaacgtacagtcggagctactttttcgaaagaataaatcaagttttagtttccgtagcggctggggtttt |
442 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45209086 |
tgatgtactcatgcaagctggtcctaatggtaacgtacagtcggagctactttttcgaaagaataaatcaagttttagtttccgtagcggctggggtttt |
45208987 |
T |
|
| Q |
443 |
ccggagaagatttatttcaacggtgatgaatgtagtatgccaccacccaacgcttacccacggttacctaatggctgttccacacaagaggtttctctcc |
542 |
Q |
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| T |
45208986 |
ccggagaagatttatttcaacggtgatgaatgtagtatgccaccacccgacgcttacccacggttacctaatggctgttccacacaagaggtttctctcc |
45208887 |
T |
|
| Q |
543 |
ttgctttgatgatgacctcgttcatattgttg |
574 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
45208886 |
ttgctttgatgatgacctcgttcatattgttg |
45208855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 1e-30; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 299 - 403
Target Start/End: Original strand, 5551688 - 5551792
Alignment:
| Q |
299 |
ttaacagatgatactgcaatgctttggggagttaaatttttcaatgatgtactcatgcaagctggtcctaatggtaacgtacagtcggagctactttttc |
398 |
Q |
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|||||||||||||| ||||||||||||||||||||||| | ||||||| ||||||||||||||||||||| |||||| ||||| || ||||||||||| | |
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| T |
5551688 |
ttaacagatgatacagcaatgctttggggagttaaattctacaatgatttactcatgcaagctggtcctattggtaatgtacaatcagagctacttttcc |
5551787 |
T |
|
| Q |
399 |
gaaag |
403 |
Q |
| |
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||||| |
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| T |
5551788 |
gaaag |
5551792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 46 - 228
Target Start/End: Original strand, 5551017 - 5551199
Alignment:
| Q |
46 |
acattaagcataactactatgagtattggcgcgtgaagattaccgtttttaatttcaattacagaaagaattactcagactggaacgtggttgttcaaca |
145 |
Q |
| |
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||||||||| ||||||| | |||||||||||||| ||| |||| ||| ||| ||||||||||| | |||||||||||| |||||| ||||||||||||| |
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| T |
5551017 |
acattaagcttaactacaaggagtattggcgcgtaaaggttactgttactaacttcaattacaggatgaattactcagattggaacttggttgttcaaca |
5551116 |
T |
|
| Q |
146 |
tccaaattttgataaattgacacaaattttcagttacaactacaaatcattagctccatatggatcaacaagtaagtttgtgt |
228 |
Q |
| |
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|||||| ||||| || |||| ||| ||||||||| ||||| ||| || || |||| || || || | |||||||||||||| |
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| T |
5551117 |
tccaaactttgacaatctgactcaacttttcagtttcaactcaaaaccaataactccttacgggtcgataagtaagtttgtgt |
5551199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 299 - 408
Target Start/End: Complemental strand, 5539161 - 5539052
Alignment:
| Q |
299 |
ttaacagatgatactgcaatgctttggggagttaaatttttcaatgatgtactcatgcaagctggtcctaatggtaacgtacagtcggagctactttttc |
398 |
Q |
| |
|
|||||||||||| | ||||| |||||||||||||| ||| ||||||| ||||||||||||| ||||||| |||||| ||||| | |||||| |||| | |
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| T |
5539161 |
ttaacagatgatgcaacaatgatttggggagttaaactttacaatgatttactcatgcaagccggtcctactggtaatgtacaattagagctaattttcc |
5539062 |
T |
|
| Q |
399 |
gaaagaataa |
408 |
Q |
| |
|
||||| |||| |
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| T |
5539061 |
gaaaggataa |
5539052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 66 - 194
Target Start/End: Complemental strand, 5539778 - 5539650
Alignment:
| Q |
66 |
gagtattggcgcgtgaagattaccgtttttaatttcaattacagaaagaattactcagactggaacgtggttgttcaacatccaaattttgataaattga |
165 |
Q |
| |
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|||||||||||||| ||| | || || |||||| |||||||| | |||||||||||| |||||| |||||||||| |||||||| ||| | || ||| |
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| T |
5539778 |
gagtattggcgcgtaaaggtcactattactaatttaaattacaggatgaattactcagattggaacttggttgttcagcatccaaacttttacaatctga |
5539679 |
T |
|
| Q |
166 |
cacaaattttcagttacaactacaaatca |
194 |
Q |
| |
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| ||| ||| ||||| ||||||||||||| |
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| T |
5539678 |
ctcaactttccagtttcaactacaaatca |
5539650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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