View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0538_low_65 (Length: 251)

Name: NF0538_low_65
Description: NF0538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0538_low_65
NF0538_low_65
[»] chr2 (2 HSPs)
chr2 (79-238)||(21754714-21754873)
chr2 (79-238)||(21768859-21769018)
[»] chr6 (4 HSPs)
chr6 (106-238)||(27642639-27642761)
chr6 (148-234)||(34269866-34269952)
chr6 (133-234)||(20074413-20074514)
chr6 (106-156)||(33252697-33252747)
[»] scaffold0007 (1 HSPs)
scaffold0007 (133-238)||(62365-62470)
[»] chr8 (1 HSPs)
chr8 (133-238)||(15831017-15831122)
[»] chr7 (4 HSPs)
chr7 (122-234)||(4890206-4890318)
chr7 (148-234)||(792947-793033)
chr7 (148-234)||(808730-808816)
chr7 (148-234)||(3423581-3423668)
[»] chr5 (2 HSPs)
chr5 (122-234)||(36432460-36432572)
chr5 (122-247)||(36432813-36432938)
[»] chr4 (4 HSPs)
chr4 (148-234)||(3357446-3357533)
chr4 (148-234)||(3367112-3367199)
chr4 (27-67)||(732530-732570)
chr4 (122-179)||(49890941-49890998)
[»] scaffold0278 (2 HSPs)
scaffold0278 (106-157)||(14893-14944)
scaffold0278 (106-157)||(18227-18278)
[»] scaffold0016 (1 HSPs)
scaffold0016 (106-156)||(57617-57667)
[»] scaffold0560 (1 HSPs)
scaffold0560 (122-179)||(9834-9891)
[»] scaffold0014 (1 HSPs)
scaffold0014 (122-179)||(187660-187717)
[»] chr3 (1 HSPs)
chr3 (109-159)||(27873277-27873327)


Alignment Details
Target: chr2 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 79 - 238
Target Start/End: Complemental strand, 21754873 - 21754714
Alignment:
Q  79 ttgaaataaaaatgattnnnnnnnccagagctgtgtatttataaaagggattggaccggttcaacccctgaaccggtctgaacccgtctattccaggccc 178  Q
    |||||||||||||||||       || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  21754873 ttgaaataaaaatgattaaaaaaaccggagctgtgtatttataaaagggattggaccggttcaacccctgaaccggtctgaaccggtctattccaggccc 21754774  T
Q  179 acacgcgcccggcctcacccaaggcccaaatcctcttcattttattttctgcaccctcct 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21754773 acacgcgcccggcctcacccaaggcccaaatcctcttcattttattttctgcaccctcct 21754714  T

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Target: chr2; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 79 - 238
Target Start/End: Complemental strand, 21769018 - 21768859
Alignment:
Q  79 ttgaaataaaaatgattnnnnnnnccagagctgtgtatttataaaagggattggaccggttcaacccctgaaccggtctgaacccgtctattccaggccc 178  Q
    |||||||||||||||||       || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||    
T  21769018 ttgaaataaaaatgattaaaaaaaccggagctgtgtatttataaaagggattggaccggttcaacccctgaaccggtctgaaccggtctattccagaccc 21768919  T
Q  179 acacgcgcccggcctcacccaaggcccaaatcctcttcattttattttctgcaccctcct 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21768918 acacgcgcccggcctcacccaaggcccaaatcctcttcattttattttctgcaccctcct 21768859  T

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Target: chr6 (Bit Score: 94; Significance: 5e-46; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 106 - 238
Target Start/End: Original strand, 27642639 - 27642761
Alignment:
Q  106 gagctgtgtatttataaaagggattggaccggttcaacccctgaaccggtctgaacccgtctattccaggcccacacgcgcccggcctcacccaaggccc 205  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||    
T  27642639 gagctgtgtatttataaaagggattggagcggttcaacccctgaaccggtct----------attccaggcccacacgcgcccggcctcacccaaggccc 27642728  T
Q  206 aaatcctcttcattttattttctgcaccctcct 238  Q
    |||||||||||||||||||||||||||||||||    
T  27642729 aaatcctcttcattttattttctgcaccctcct 27642761  T

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Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 148 - 234
Target Start/End: Original strand, 34269866 - 34269952
Alignment:
Q  148 gaaccggtctgaacccgtctattccaggcccacacgcgcccggcctcacccaaggcccaaatcctcttcattttattttctgcaccc 234  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||    
T  34269866 gaaccggtctgaaccggtctattccaggcccacacgcgcctggcctcacccaaggcccaaatccttttcgttttattttctgcaccc 34269952  T

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Target: chr6; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 133 - 234
Target Start/End: Complemental strand, 20074514 - 20074413
Alignment:
Q  133 accggttcaacccctgaaccggtctgaacccgtctattccaggcccacacgcgcccggcctcacccaaggcccaaatcctcttcattttattttctgcac 232  Q
    ||||||||||||   ||||||||||||||| ||||| |||| ||||||||||| | ||| ||||||||||||||||||||||||||||||||| ||||||    
T  20074514 accggttcaaccttggaaccggtctgaaccggtctaatccaagcccacacgcgtctggcttcacccaaggcccaaatcctcttcattttatttcctgcac 20074415  T
Q  233 cc 234  Q
    ||    
T  20074414 cc 20074413  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 106 - 156
Target Start/End: Original strand, 33252697 - 33252747
Alignment:
Q  106 gagctgtgtatttataaaagggattggaccggttcaacccctgaaccggtc 156  Q
    |||||||||||||||||||||||||| |||||||||||  |||||||||||    
T  33252697 gagctgtgtatttataaaagggattgaaccggttcaacttctgaaccggtc 33252747  T

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Target: scaffold0007 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 133 - 238
Target Start/End: Original strand, 62365 - 62470
Alignment:
Q  133 accggttcaacccctgaaccggtctgaacccgtctattccaggcccacacgcgcccggcctcacccaaggcccaaatcctcttcattttattttctgcac 232  Q
    ||||||||||||   ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  62365 accggttcaaccttggaaccggtctgaaccggtctattccaggcccacacgcgcctggcctcacccaaggcccaaatcctcttcattttattttctgcac 62464  T
Q  233 cctcct 238  Q
    ||||||    
T  62465 cctcct 62470  T

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Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 133 - 238
Target Start/End: Original strand, 15831017 - 15831122
Alignment:
Q  133 accggttcaacccctgaaccggtctgaacccgtctattccaggcccacacgcgcccggcctcacccaaggcccaaatcctcttcattttattttctgcac 232  Q
    ||||||||||||   ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  15831017 accggttcaaccttggaaccggtctgaaccggtctattccaggcccacacgcgcctggcctcacccaaggcccaaatcctcttcattttattttctgcac 15831116  T
Q  233 cctcct 238  Q
    ||||||    
T  15831117 cctcct 15831122  T

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Target: chr7 (Bit Score: 77; Significance: 8e-36; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 122 - 234
Target Start/End: Complemental strand, 4890318 - 4890206
Alignment:
Q  122 aaagggattggaccggttcaacccctgaaccggtctgaacccgtctattccaggcccacacgcgcccggcctcacccaaggcccaaatcctcttcatttt 221  Q
    |||||||||| ||||||||||||  | |||||||||||||| ||||| |||| ||||||||||| | |||||||||||||||||||||||||||||||||    
T  4890318 aaagggattgaaccggttcaacctttaaaccggtctgaaccggtctaatccaagcccacacgcgtctggcctcacccaaggcccaaatcctcttcatttt 4890219  T
Q  222 attttctgcaccc 234  Q
    |||||||||||||    
T  4890218 attttctgcaccc 4890206  T

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Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 148 - 234
Target Start/End: Complemental strand, 793033 - 792947
Alignment:
Q  148 gaaccggtctgaacccgtctattccaggcccacacgcgcccggcctcacccaaggcccaaatcctcttcattttattttctgcaccc 234  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||    
T  793033 gaaccggtctgaaccggtctattccaggcccacacgcgcctggcctcacccaaggcccaaatccttttcgttttattttctgcaccc 792947  T

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Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 148 - 234
Target Start/End: Complemental strand, 808816 - 808730
Alignment:
Q  148 gaaccggtctgaacccgtctattccaggcccacacgcgcccggcctcacccaaggcccaaatcctcttcattttattttctgcaccc 234  Q
    ||||||||||||||| |||||||||| ||||||||||||| ||||||||||||| |||||||||| ||| |||||||||||||||||    
T  808816 gaaccggtctgaaccggtctattccaagcccacacgcgcctggcctcacccaagacccaaatccttttcgttttattttctgcaccc 808730  T

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Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 148 - 234
Target Start/End: Complemental strand, 3423668 - 3423581
Alignment:
Q  148 gaaccggtctgaacccgtctattccaggcccacacgcgcccggcctcacccaaggcccaaatcctcttcatttta-ttttctgcaccc 234  Q
    ||||||||||||||| | |||||||||||||||||||||| ||||| ||||||| |||||||||| ||| ||||| ||||||||||||    
T  3423668 gaaccggtctgaaccggcctattccaggcccacacgcgcctggcctnacccaagacccaaatccttttcgttttatttttctgcaccc 3423581  T

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Target: chr5 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 122 - 234
Target Start/End: Original strand, 36432460 - 36432572
Alignment:
Q  122 aaagggattggaccggttcaacccctgaaccggtctgaacccgtctattccaggcccacacgcgcccggcctcacccaaggcccaaatcctcttcatttt 221  Q
    |||||||||| ||||||||||||  | |||||||||||||| ||||| |||| ||||||||||| | |||||||||||||||||||||||||||||||||    
T  36432460 aaagggattgaaccggttcaacctttaaaccggtctgaaccagtctaatccaagcccacacgcgtctggcctcacccaaggcccaaatcctcttcatttt 36432559  T
Q  222 attttctgcaccc 234  Q
    |||||||||||||    
T  36432560 attttctgcaccc 36432572  T

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Target: chr5; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 122 - 247
Target Start/End: Original strand, 36432813 - 36432938
Alignment:
Q  122 aaagggattggaccggttcaacccctgaaccggtctgaacccgtctattccaggcccacacgcgcccggcctcacccaaggcccaaatcctcttcatttt 221  Q
    |||||||||| ||||||||||||  | |||||||||||||| ||||| |||| || |||||||| | |||||||||||||||||||||||||||||||||    
T  36432813 aaagggattgaaccggttcaacctttaaaccggtctgaaccagtctaatccaagctcacacgcgtctggcctcacccaaggcccaaatcctcttcatttt 36432912  T
Q  222 attttctgcaccctcctatgctactc 247  Q
    ||||||||||||| ||| | ||||||    
T  36432913 attttctgcacccccctttactactc 36432938  T

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Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 148 - 234
Target Start/End: Original strand, 3357446 - 3357533
Alignment:
Q  148 gaaccggtctgaacccgtctattccaggcccacacgcgcccggcctcacccaaggcccaaatcctcttcatttta-ttttctgcaccc 234  Q
    ||||||||||||||| | |||||||||||||||||||||| ||||||||||||| |||||||||| ||| ||||| ||||||||||||    
T  3357446 gaaccggtctgaaccggcctattccaggcccacacgcgcctggcctcacccaagacccaaatccttttcgttttatttttctgcaccc 3357533  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 148 - 234
Target Start/End: Original strand, 3367112 - 3367199
Alignment:
Q  148 gaaccggtctgaacccgtctattccaggcccacacgcgcccggcctcacccaaggcccaaatcctcttcatttta-ttttctgcaccc 234  Q
    ||||||||||||||| | |||||||||||||||||||||| ||||||||||||| |||||||||| ||| ||||| ||||||||||||    
T  3367112 gaaccggtctgaaccggcctattccaggcccacacgcgcctggcctcacccaagacccaaatccttttcgttttatttttctgcaccc 3367199  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 67
Target Start/End: Original strand, 732530 - 732570
Alignment:
Q  27 ctatatatatgcattacattccaattaatatatcaaaacac 67  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  732530 ctatatatatgcattacattccaattaatatatcaaaacac 732570  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 49890941 - 49890998
Alignment:
Q  122 aaagggattggaccggttcaacccctgaaccggtctgaacccgtctattccaggccca 179  Q
    |||||||||| ||||||||||||  | |||||||||||||| ||||| ||||||||||    
T  49890941 aaagggattgaaccggttcaacctttaaaccggtctgaaccggtctaatccaggccca 49890998  T

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Target: scaffold0278 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: scaffold0278
Description:

Target: scaffold0278; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 106 - 157
Target Start/End: Complemental strand, 14944 - 14893
Alignment:
Q  106 gagctgtgtatttataaaagggattggaccggttcaacccctgaaccggtct 157  Q
    |||||||||||||||||||||||||| |||||||||| | ||||||||||||    
T  14944 gagctgtgtatttataaaagggattgaaccggttcaatctctgaaccggtct 14893  T

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Target: scaffold0278; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 106 - 157
Target Start/End: Complemental strand, 18278 - 18227
Alignment:
Q  106 gagctgtgtatttataaaagggattggaccggttcaacccctgaaccggtct 157  Q
    |||||||||||||||||||||||||| |||||||||| | ||||||||||||    
T  18278 gagctgtgtatttataaaagggattgaaccggttcaatctctgaaccggtct 18227  T

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Target: scaffold0016 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 106 - 156
Target Start/End: Complemental strand, 57667 - 57617
Alignment:
Q  106 gagctgtgtatttataaaagggattggaccggttcaacccctgaaccggtc 156  Q
    |||||||||||||||||||||||||| |||||||||||  |||||||||||    
T  57667 gagctgtgtatttataaaagggattgaaccggttcaacttctgaaccggtc 57617  T

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Target: scaffold0560 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0560
Description:

Target: scaffold0560; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 9834 - 9891
Alignment:
Q  122 aaagggattggaccggttcaacccctgaaccggtctgaacccgtctattccaggccca 179  Q
    |||||||||| ||||||||||||  | |||||||||||||| ||||| ||||||||||    
T  9834 aaagggattgaaccggttcaacctttaaaccggtctgaaccggtctaatccaggccca 9891  T

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Target: scaffold0014 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 179
Target Start/End: Complemental strand, 187717 - 187660
Alignment:
Q  122 aaagggattggaccggttcaacccctgaaccggtctgaacccgtctattccaggccca 179  Q
    |||||||||| ||||||||||||  | |||||||||||||| ||||| ||||||||||    
T  187717 aaagggattgaaccggttcaacctttaaaccggtctgaaccggtctaatccaggccca 187660  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 159
Target Start/End: Original strand, 27873277 - 27873327
Alignment:
Q  109 ctgtgtatttataaaagggattggaccggttcaacccctgaaccggtctga 159  Q
    |||| |||||||||  ||||||| |||||||||||| ||||||||||||||    
T  27873277 ctgtctatttataacggggattgaaccggttcaacctctgaaccggtctga 27873327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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