View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0538_low_66 (Length: 251)
Name: NF0538_low_66
Description: NF0538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0538_low_66 |
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| [»] scaffold0070 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 70 - 226
Target Start/End: Original strand, 7247228 - 7247384
Alignment:
| Q |
70 |
gaacctgtgatgcttctgnnnnnnnctctgcacctgcctttgttgttgctgctgctgcccttgtctctgacatcttttacagaaattcataaactaatgt |
169 |
Q |
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| T |
7247228 |
gaacctgtgatgcttctgtttttttctctgcacctgcctttgttgttgctgctgctgcccttgtctctgacatcttttacacaaattcataaactaatgt |
7247327 |
T |
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| Q |
170 |
acaaagaaaaaattaaattcaaatgcatgttagtccatgcacctttggttttgctgt |
226 |
Q |
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| T |
7247328 |
acaaagaaaaaattaaatgcaaatgcatgttagtccatgcacctttggttttgctgt |
7247384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 122 - 217
Target Start/End: Complemental strand, 25321474 - 25321379
Alignment:
| Q |
122 |
tgctgcccttgtctctgacatcttttacagaaattcataaactaatgtacaaagaaaaaattaaattcaaatgcatgttagtccatgcacctttgg |
217 |
Q |
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| T |
25321474 |
tgctgcctttgtctctaacatcttttacaaaaattcactaataaatgtacaaataaaaactaaatttcaaatgcatgttggtccattcacctttgg |
25321379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 122 - 217
Target Start/End: Original strand, 18409 - 18505
Alignment:
| Q |
122 |
tgctgcccttgtctctgacatctttt-acagaaattcataaactaatgtacaaagaaaaaattaaattcaaatgcatgttagtccatgcacctttgg |
217 |
Q |
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||||||| ||||| |||||||||||| ||| ||||||| || |||||||||||||||| | || |||||||||||||| |||||| ||||||||| |
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| T |
18409 |
tgctgcctttgtcactgacatctttttacaaaaattcacaaggaaatgtacaaagaaaaactaaatttcaaatgcatgttggtccattcacctttgg |
18505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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