View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0538_low_7 (Length: 541)

Name: NF0538_low_7
Description: NF0538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0538_low_7
NF0538_low_7
[»] chr3 (2 HSPs)
chr3 (30-532)||(10945293-10945795)
chr3 (261-344)||(51882521-51882604)
[»] chr1 (2 HSPs)
chr1 (386-531)||(24307294-24307439)
chr1 (313-373)||(21355033-21355093)
[»] scaffold0196 (1 HSPs)
scaffold0196 (264-373)||(31613-31722)
[»] chr4 (2 HSPs)
chr4 (264-373)||(10988295-10988404)
chr4 (91-135)||(45038168-45038212)
[»] chr7 (1 HSPs)
chr7 (454-527)||(21909040-21909113)
[»] chr8 (2 HSPs)
chr8 (263-355)||(21407641-21407733)
chr8 (263-355)||(21802133-21802225)
[»] scaffold0001 (1 HSPs)
scaffold0001 (264-355)||(198795-198886)
[»] chr5 (1 HSPs)
chr5 (92-137)||(25456589-25456634)


Alignment Details
Target: chr3 (Bit Score: 470; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 30 - 532
Target Start/End: Original strand, 10945293 - 10945795
Alignment:
Q  30 gttactaaaactatccatcnnnnnnnttttgttaatttgtttaaaagtttaatccttctaaattacaaacctcaaacctaaagaaccctttgtgtaattt 129  Q
    |||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10945293 gttactaaaactatccatcaaaaaaattttgttaatttgtttaaaagtttaatccttctaaattacaaacctcaaacctaaagaaccctttgtgtaattt 10945392  T
Q  130 agccaaaataaaatgtaaaagaaatatagtgaagcagtttggatatagatataaattataggatagagtaaaataaactaattttaaacatatctaaagt 229  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10945393 agccaaaataaaatgtaaaagaaatatagtgaagcagtttggacatagatataaattataggatagagtaaaataaactaattttaaacatatctaaagt 10945492  T
Q  230 atgataaagggttctgtttttcaggaggagcttttgggtctcattttggctatggagtatgcagctgcgaataattggactcgtttatagcttgaaagtg 329  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  10945493 atgataaagggttctgtttttcaggaggagcttttgggtctcattttggctatggagtatgcagctgcgaataattggactcgtttatagcttgaaagta 10945592  T
Q  330 actcttccagtgcggttcatgctttcaacaatccctctcttatttacattcatttacggaaccattggcataactgcacacaccgtggtctgatggttat 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  10945593 actcttccagtgcggttcatgctttcaacaatccctctcttatttacattcatttacggaaccgttggcataactgcacacaccgtggtctgatggttat 10945692  T
Q  430 ttgttcacatattttctgggaagaaaacggttgtgttgacaagttcgcaactttggggcatgcgttgatagacactacttggtacatcattttgccttct 529  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10945693 ttgttcacatattttctgggaagaaaacggttgtgttgacaagttcgcaactttggggcatgcgttgatagacactacttggtacatcattttgccttct 10945792  T
Q  530 ttt 532  Q
    |||    
T  10945793 ttt 10945795  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 344
Target Start/End: Original strand, 51882521 - 51882604
Alignment:
Q  261 ttttgggtctcattttggctatggagtatgcagctgcgaataattggactcgtttatagcttgaaagtgactcttccagtgcgg 344  Q
    ||||||||||||||||||||||||||||||| ||| | || |||||| | || || | ||||||||| || || || |||||||    
T  51882521 ttttgggtctcattttggctatggagtatgcggcttcaaacaattggtcccgcttgtggcttgaaagcgattcctctagtgcgg 51882604  T

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Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 386 - 531
Target Start/End: Complemental strand, 24307439 - 24307294
Alignment:
Q  386 cggaaccattggcataactgcacacaccgtggtctgatggttatttgttcacatattttctgggaagaaaacggttgtgttgacaagttcgcaactttgg 485  Q
    |||||||||||||| || ||||| ||||||||||||||| |||||||||| ||||| ||  |||||| |||| ||||||  ||   | | ||||||||||    
T  24307439 cggaaccattggcacaattgcactcaccgtggtctgatgattatttgttcgcatatctttcgggaaggaaactgttgtgcggatgggcttgcaactttgg 24307340  T
Q  486 ggcatgcgttgatagacactacttggtacatcattttgccttcttt 531  Q
    ||||||||  || |||||||||||||| |  |||||| ||||||||    
T  24307339 ggcatgcgcagacagacactacttggttcgccattttaccttcttt 24307294  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 313 - 373
Target Start/End: Original strand, 21355033 - 21355093
Alignment:
Q  313 tttatagcttgaaagtgactcttccagtgcggttcatgctttcaacaatccctctcttatt 373  Q
    ||||| ||||||||| |||||||| ||||||||||| |||||| | || || |||||||||    
T  21355033 tttatggcttgaaagcgactcttctagtgcggttcaggctttccataaaccatctcttatt 21355093  T

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Target: scaffold0196 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 264 - 373
Target Start/End: Complemental strand, 31722 - 31613
Alignment:
Q  264 tgggtctcattttggctatggagtatgcagctgcgaataattggactcgtttatagcttgaaagtgactcttccagtgcggttcatgctttcaacaatcc 363  Q
    |||| ||||||||||||||||| ||||||  | | || |  ||||||||||||| |||||||||||| ||||| ||||||||||| |||||| | || ||    
T  31722 tgggactcattttggctatggaatatgcaagttcaaacagctggactcgtttatggcttgaaagtgattcttctagtgcggttcaagctttccataaacc 31623  T
Q  364 ctctcttatt 373  Q
     |||||||||    
T  31622 atctcttatt 31613  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 264 - 373
Target Start/End: Complemental strand, 10988404 - 10988295
Alignment:
Q  264 tgggtctcattttggctatggagtatgcagctgcgaataattggactcgtttatagcttgaaagtgactcttccagtgcggttcatgctttcaacaatcc 363  Q
    |||| ||||||||||||||||| ||||||  | | || |  ||||||||||||| |||||||||||| ||||| ||||||||||| |||||| | || ||    
T  10988404 tgggactcattttggctatggaatatgcaagttcaaacagctggactcgtttatggcttgaaagtgattcttctagtgcggttcaagctttccataaacc 10988305  T
Q  364 ctctcttatt 373  Q
     |||||||||    
T  10988304 atctcttatt 10988295  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 91 - 135
Target Start/End: Complemental strand, 45038212 - 45038168
Alignment:
Q  91 attacaaacctcaaacctaaagaaccctttgtgtaatttagccaa 135  Q
    |||||||||||||||| |||||||||||   ||||||||||||||    
T  45038212 attacaaacctcaaacttaaagaaccctggatgtaatttagccaa 45038168  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 454 - 527
Target Start/End: Complemental strand, 21909113 - 21909040
Alignment:
Q  454 aaacggttgtgttgacaagttcgcaactttggggcatgcgttgatagacactacttggtacatcattttgcctt 527  Q
    |||| |||||| |||| || | |||||||||||| ||||| ||| ||||||||||||||||| |||||||||||    
T  21909113 aaactgttgtgctgactagctagcaactttggggtatgcgctgacagacactacttggtacaccattttgcctt 21909040  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 263 - 355
Target Start/End: Complemental strand, 21407733 - 21407641
Alignment:
Q  263 ttgggtctcattttggctatggagtatgcagctgcgaataattggactcgtttatagcttgaaagtgactcttccagtgcggttcatgctttc 355  Q
    ||||| ||||||||||||||||| ||||||  | | || |  ||||||||||||| |||||||||||| ||||| |||||||| || ||||||    
T  21407733 ttgggcctcattttggctatggaatatgcaagttcaaacagctggactcgtttatggcttgaaagtgattcttctagtgcggtacaagctttc 21407641  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 263 - 355
Target Start/End: Complemental strand, 21802225 - 21802133
Alignment:
Q  263 ttgggtctcattttggctatggagtatgcagctgcgaataattggactcgtttatagcttgaaagtgactcttccagtgcggttcatgctttc 355  Q
    ||||| ||||||||||||||||| ||||||  | | || |  ||||||||||||| |||||||||||| ||||| |||||||| || ||||||    
T  21802225 ttgggcctcattttggctatggaatatgcaagttcaaacagctggactcgtttatggcttgaaagtgattcttctagtgcggtacaagctttc 21802133  T

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Target: scaffold0001 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 264 - 355
Target Start/End: Complemental strand, 198886 - 198795
Alignment:
Q  264 tgggtctcattttggctatggagtatgcagctgcgaataattggactcgtttatagcttgaaagtgactcttccagtgcggttcatgctttc 355  Q
    |||| ||||||||||||||||| ||||||  | | || |  ||||||||||||| |||||||||||| ||||| |||||||| || ||||||    
T  198886 tgggcctcattttggctatggaatatgcaagttcaaacagctggactcgtttatggcttgaaagtgattcttctagtgcggtacaagctttc 198795  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 25456589 - 25456634
Alignment:
Q  92 ttacaaacctcaaacctaaagaaccctttgtgtaatttagccaaaa 137  Q
    ||||||||||||||| |||||||||| | | |||||||||||||||    
T  25456589 ttacaaacctcaaacttaaagaacccatggagtaatttagccaaaa 25456634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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